View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4934_low_24 (Length: 252)

Name: NF4934_low_24
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4934_low_24
NF4934_low_24
[»] chr8 (3 HSPs)
chr8 (10-169)||(27513624-27513783)
chr8 (10-128)||(8675126-8675245)
chr8 (202-251)||(34154786-34154834)
[»] chr1 (2 HSPs)
chr1 (28-201)||(39210040-39210197)
chr1 (37-169)||(24036791-24036927)
[»] chr3 (2 HSPs)
chr3 (31-140)||(9461180-9461298)
chr3 (202-251)||(47594475-47594524)
[»] chr2 (1 HSPs)
chr2 (47-159)||(38950770-38950885)
[»] chr4 (2 HSPs)
chr4 (202-251)||(47952676-47952725)
chr4 (202-251)||(26594675-26594724)
[»] chr6 (2 HSPs)
chr6 (43-95)||(18331979-18332031)
chr6 (97-164)||(18331878-18331945)


Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 27513783 - 27513624
Alignment:
Q  10 gagatgaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgtt 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27513783 gagaagaaggtgccgaagaccttgaaaatacaagggaagttgatgaaactacctgcaagcctgatgatgaagaggttgagttttttgaattttgagtgtt 27513684  T
Q  110 ttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatatatatt 169  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  27513683 ttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtagaatatatatt 27513624  T

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Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 8675126 - 8675245
Alignment:
Q  10 gagatgaaggtgccgaagacc-ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgt 108  Q
    |||| |||||||||||||||  |||| |||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  8675126 gagaagaaggtgccgaagacgattgagaatacaagggaagttgatgagactgtttgcaagcctgatgatgaagaggttgagttttttaaattttgattgt 8675225  T
Q  109 tttgaactaatttgaatatg 128  Q
    ||||| ||||||| ||||||    
T  8675226 tttgacctaatttcaatatg 8675245  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 34154834 - 34154786
Alignment:
Q  202 gagagatgatacgttgacacacttatgtggcaacataccactctacacct 251  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||||    
T  34154834 gagagatgatacattgacacact-atgtggcaacatacaattctacacct 34154786  T

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Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 28 - 201
Target Start/End: Original strand, 39210040 - 39210197
Alignment:
Q  28 accttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttgaattttgattgttttgaactaatttgaatat 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                ||||||||||||||||    
T  39210040 accttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgattttttt----------------gaactaatttgaatat 39210123  T
Q  128 gaatagattagattccaatgttgtgagtgtagaatatatattataatggaggctccatttgatgtatacaagaa 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39210124 gaatagattagattccaatgttgtgagtgtagaatatatattataatggaggttccatttgatgtatacaagaa 39210197  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 24036927 - 24036791
Alignment:
Q  37 atacaagggaagttgatgaaactatctgcaagcc----tgatgatgaagaggttgagttttttgaattttgattgttttgaactaa-tttgaatatgaat 131  Q
    |||||||  |||||||||||||||||||||||||    ||||||||||||||||||||||||| | ||||||||||||||| |||| |||| |||| |||    
T  24036927 atacaagctaagttgatgaaactatctgcaagccatcctgatgatgaagaggttgagtttttt-agttttgattgttttgatctaaatttgtatataaat 24036829  T
Q  132 agattagattccaatgttgtgagtgtagaatatatatt 169  Q
    | || ||||| ||||||| |||||||||||||||||||    
T  24036828 aaatcagatttcaatgttttgagtgtagaatatatatt 24036791  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 9461180 - 9461298
Alignment:
Q  31 ttgaaaatacaagggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagttttt---------tgaattttgattgttttgaactaattt 121  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||         | ||||||||||||||||| |||||||    
T  9461180 ttgaaaataagaaggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttttttttttgttaattttgattgttttgacctaattt 9461279  T
Q  122 gaatatgaatagattagat 140  Q
    |||||||| ||||||||||    
T  9461280 gaatatgattagattagat 9461298  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 47594475 - 47594524
Alignment:
Q  202 gagagatgatacgttgacacacttatgtggcaacataccactctacacct 251  Q
    ||||| |||||||||||||| | ||| ||||||||||||| |||||||||    
T  47594475 gagagctgatacgttgacacccctatatggcaacataccattctacacct 47594524  T

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Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 159
Target Start/End: Complemental strand, 38950885 - 38950770
Alignment:
Q  47 agttgatgaaactatctgcaagcctgatgatgaagaggttgagttttttg------aattttgattgttttgaactaatttgaatatgaatagattagat 140  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||       ||||||||||||||||| ||||||||||||||| ||||||||||    
T  38950885 agttgatgaaactatctgcaagcctgatga---agaggttgagtttttttttttttaattttgattgttttgacctaatttgaatatgattagattagat 38950789  T
Q  141 tccaatgttgtgagtgtag 159  Q
    | ||| |||||||||||||    
T  38950788 ttcaaagttgtgagtgtag 38950770  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 47952725 - 47952676
Alignment:
Q  202 gagagatgatacgttgacacacttatgtggcaacataccactctacacct 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47952725 gagagatgatacgttgacacacttatgtggcaacataccactctacacct 47952676  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 202 - 251
Target Start/End: Complemental strand, 26594724 - 26594675
Alignment:
Q  202 gagagatgatacgttgacacacttatgtggcaacataccactctacacct 251  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  26594724 gagagatgatacatggacacacttatgtggcaacataccactctacacct 26594675  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 95
Target Start/End: Complemental strand, 18332031 - 18331979
Alignment:
Q  43 gggaagttgatgaaactatctgcaagcctgatgatgaagaggttgagtttttt 95  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18332031 gggaagttgatgaaactatctacaagcctgatgatgaagaggttgagtttttt 18331979  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 18331945 - 18331878
Alignment:
Q  97 aattttgattgttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtagaatat 164  Q
    |||||||||||||||||  |||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatat 18331878  T

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