View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_25 (Length: 249)
Name: NF4934_low_25
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_25 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 3639876 - 3640096
Alignment:
| Q |
1 |
agacttggcattaaatgtaagtagataatatgtataactctctcttgaagtgtgtagaattatctcctaatttatgcagaactctcccttggagcctata |
100 |
Q |
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| T |
3639876 |
agacttggcattaaatgtaagtagataatatgtataactctctcttgaagtgtgtagaattatctcctaatttatgcagaactctctcttggagcctata |
3639975 |
T |
|
| Q |
101 |
aataggtgaaagcttgtcatttgtaaagcaagcaattaaaacaaacaagtaagaaatcaaagcattctctcacggaatagaaattgtccttctctttaag |
200 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639976 |
aataggtgaaagcttgtcgtttgtaaagcaagcaattaaaacaaacaagtaagaaatcaaagcattctctcacggaatagaaattgtccttctctttaat |
3640075 |
T |
|
| Q |
201 |
attctctcctcctcaatttct |
221 |
Q |
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||||||||||||||||||||| |
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| T |
3640076 |
attctctcctcctcaatttct |
3640096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 4872449 - 4872395
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaag |
132 |
Q |
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| T |
4872449 |
agaactctcccttggagcctataaaaaggggagagcttgtcatttgtaaatcaag |
4872395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 4892269 - 4892215
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaag |
132 |
Q |
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| T |
4892269 |
agaactctcccttagagcctataaaaaggggagagcttgtcatttgtaaatcaag |
4892215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 32238589 - 32238646
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaagcaa |
135 |
Q |
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| T |
32238589 |
agaactctcccttggagcctataaaaaggggagagcttgtcatttgtaaatcaagcaa |
32238646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 135
Target Start/End: Complemental strand, 26947123 - 26947026
Alignment:
| Q |
40 |
ctctcttgaagtgtgtagaa--ttatctcctaatttatgcagaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaagcaa |
135 |
Q |
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| T |
26947123 |
ctctcttgaagtgtgtagaaagttatcccatgatgtgtctagaactctcccttggagcctataaaaaggggagagcttgtcattagtaaatcaagcaa |
26947026 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 3507225 - 3507282
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaagcaa |
135 |
Q |
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|||||||||| ||| |||||||||| ||| || || |||||||||||||| ||||||| |
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|
| T |
3507225 |
agaactctcctttgaagcctataaaaaggggagagtttgtcatttgtaaaccaagcaa |
3507282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 1258 - 1201
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaagcaa |
135 |
Q |
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|||| |||||||||||||||||||| || || ||| ||||||||||||| ||||||| |
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| T |
1258 |
agaaatctcccttggagcctataaaacggggagagcgtgtcatttgtaaatcaagcaa |
1201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 12074254 - 12074311
Alignment:
| Q |
78 |
agaactctcccttggagcctataaataggtgaaagcttgtcatttgtaaagcaagcaa |
135 |
Q |
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||||||||| |||| |||||||||| | | || ||||||||||||||||| ||||||| |
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| T |
12074254 |
agaactctctcttgaagcctataaaaatgggagagcttgtcatttgtaaaccaagcaa |
12074311 |
T |
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