View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_27 (Length: 236)
Name: NF4934_low_27
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_27 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 27275 - 27454
Alignment:
| Q |
44 |
atatgggacgaatcactcacgtttaaatcccaataattttgaatattgagcattggttcaatgccaacagtagggattaataaatgcttgctgtatccct |
143 |
Q |
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| T |
27275 |
atatgggactaatcactcacgtttaaattccaataattttgaatattgagcattggttcaatgccaacagtagggattaataaatgcttcttgtatccct |
27374 |
T |
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| Q |
144 |
ttgaagagcttattgtaataataaatggagcagccaaagaaataaagaagaaaacaaattaggtatgactgtgactaatg |
223 |
Q |
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| T |
27375 |
ttgaagagcttattgtaataataaatggagcagccaaagaaataaagaagaaaaaaaattaggtatgactgtgactaatg |
27454 |
T |
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Target: scaffold0086; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27170 - 27203
Alignment:
| Q |
14 |
atcagtatcgataagagatctagagaccacatat |
47 |
Q |
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| T |
27170 |
atcagcatcgataagagatctagagaccacatat |
27203 |
T |
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