View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4934_low_28 (Length: 234)
Name: NF4934_low_28
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_28 |
 | |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr3 (11 HSPs) |
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| [»] chr7 (13 HSPs) |
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| [»] chr6 (8 HSPs) |
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| [»] chr8 (4 HSPs) |
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| [»] scaffold0090 (1 HSPs) |
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| [»] scaffold0035 (1 HSPs) |
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| [»] chr5 (7 HSPs) |
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| [»] scaffold0485 (1 HSPs) |
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| [»] scaffold0222 (1 HSPs) |
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| [»] scaffold0220 (1 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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| [»] scaffold0113 (1 HSPs) |
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| [»] scaffold1184 (1 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 27045673 - 27045461
Alignment:
| Q |
22 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045673 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
27045574 |
T |
|
| Q |
122 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045573 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
27045474 |
T |
|
| Q |
222 |
atcccttgattca |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
27045473 |
atcccttgattca |
27045461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
| Q |
57 |
ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtaggg |
155 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||||||| |||| |
|
|
| T |
22626469 |
ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg |
22626567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 21785853 - 21785986
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || ||||||||||||| |||||| ||||||| || ||| |
|
|
| T |
21785853 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattga |
21785949 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| ||| |||||| |||| || |||| |||| |
|
|
| T |
21785950 |
ctctccactcatgttggtacttgttagaagggccatg |
21785986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 15349253 - 15349464
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349253 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
15349352 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga |
222 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15349353 |
attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttga |
15349452 |
T |
|
| Q |
223 |
tcccttgattca |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15349453 |
tcccttgattca |
15349464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 14687181 - 14687398
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14687181 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaata |
14687280 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||||| |
|
|
| T |
14687281 |
attctccatttatattggtaattgtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcc |
14687380 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14687381 |
tcttgatcccttgattca |
14687398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 42711184 - 42711401
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42711184 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaata |
42711283 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||| || |||||||||| |
|
|
| T |
42711284 |
attctccattcatattggtaattatgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc |
42711383 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
42711384 |
tcttgatcctttgattca |
42711401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 45240267 - 45240404
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatg |
122 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| ||||| || || |
|
|
| T |
45240267 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg |
45240366 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
| |||||| |||||||||||||||||| |||| |||| |
|
|
| T |
45240367 |
actctccactcatattggtaattgtgagaagggccatg |
45240404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 11498023 - 11498159
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | | ||| |
|
|
| T |
11498023 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattga |
11498122 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||| |
|
|
| T |
11498123 |
ctctccactcatattggtaattgttagaagggtcatg |
11498159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 18290824 - 18290701
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| | |||||||||||||||||| || |||||||||||||||||||| |||| || || ||| |
|
|
| T |
18290824 |
tgtacctgtgggttagtgccaacataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattga |
18290725 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgt |
147 |
Q |
| |
|
| |||| ||||||||||||||| |
|
|
| T |
18290724 |
atttccactcatattggtaattgt |
18290701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 150
Target Start/End: Original strand, 11918125 - 11918233
Alignment:
| Q |
41 |
accaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattgg |
140 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||| ||| ||| | |||| |||||||| |
|
|
| T |
11918125 |
accaacataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattgg |
11918223 |
T |
|
| Q |
141 |
taattgtgag |
150 |
Q |
| |
|
|||||||||| |
|
|
| T |
11918224 |
taattgtgag |
11918233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 10629551 - 10629417
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||| ||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
10629551 |
tgtacctgtgggttagtgccaacataaa---agttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
10629455 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
10629454 |
ctctccactcatattgggaattgtgagaagggccatgg |
10629417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 6813668 - 6813456
Alignment:
| Q |
22 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813668 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
6813569 |
T |
|
| Q |
122 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6813568 |
gattctccatgcatattggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
6813469 |
T |
|
| Q |
222 |
atcccttgattca |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6813468 |
atcccttgattca |
6813456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 12777913 - 12778130
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
12777913 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaata |
12778012 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||| |||| | |||||| ||||||| || || ||||||| |
|
|
| T |
12778013 |
attctccattcatattgataattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcc |
12778112 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12778113 |
tcttgatcccttgattca |
12778130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 15024508 - 15024291
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||| | |
|
|
| T |
15024508 |
ttgtacatgtggattagtaccaacataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctatta |
15024409 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |||| ||||||||||| | | ||||||| |
|
|
| T |
15024408 |
attctccattcatattggtaattgtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcc |
15024309 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
15024308 |
tcttgatcccttgattca |
15024291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20562153 - 20562017
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |||||| || ||| |
|
|
| T |
20562153 |
tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga |
20562054 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20562053 |
ctctccactcatattggtaattgtgagaagggccatg |
20562017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20564461 - 20564325
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |||||| || ||| |
|
|
| T |
20564461 |
tgtacctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga |
20564362 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20564361 |
ctctccactcatattggtaattgtgagaagggccatg |
20564325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 20559845 - 20559709
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
|||| |||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| || |||||||||||||||||||| |||||| || ||| |
|
|
| T |
20559845 |
tgtatctgtgggttagtgccaacacaaacctagttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattga |
20559746 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20559745 |
ctctccactcatattggtaattgtgagaagggccatg |
20559709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 13090217 - 13090351
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
13090217 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
13090313 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|| ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
13090314 |
ctcaccactcatattgggaattgtgagaagggccatgg |
13090351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 9362367 - 9362501
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
9362367 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattga |
9362463 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| |||||||| |||||||| |||| ||||| |
|
|
| T |
9362464 |
ctctccactcatattggggattgtgagaagggccatgg |
9362501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13096514 - 13096380
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||| || ||| |
|
|
| T |
13096514 |
tgtacctgtgggttagtgtcaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattga |
13096418 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| ||| |||| ||||||||| |||| ||||| |
|
|
| T |
13096417 |
ctctccactcatgttgggaattgtgagaagggccatgg |
13096380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 69
Target Start/End: Original strand, 3246922 - 3246968
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacct |
69 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
3246922 |
ttgtacctgtgggttagtacaaaaataaaacaaattttccaccacct |
3246968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 20153581 - 20153465
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||| ||||||| |||||||||| || ||||| ||||||||| |||||| ||| || ||| |||||||||||||| ||||||| | ||| |
|
|
| T |
20153581 |
tgtacctgtaggttagtgccaacataaacaaagttttctaccacctccagattaggaatatctgaa---ggtagaataatcaagaaattagcagcattga |
20153485 |
T |
|
| Q |
124 |
ttctccatgcatattggtaa |
143 |
Q |
| |
|
|||||| ||||||||||| |
|
|
| T |
20153484 |
ctctccactcatattggtaa |
20153465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 540167 - 540379
Alignment:
| Q |
22 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
540167 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaat |
540266 |
T |
|
| Q |
122 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
221 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
540267 |
gattctcctttcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
540366 |
T |
|
| Q |
222 |
atcccttgattca |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
540367 |
atcccttgattca |
540379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 16327176 - 16327393
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
16327176 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaata |
16327275 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| || ||||||| |
|
|
| T |
16327276 |
attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc |
16327375 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
16327376 |
tcttgatcccttgattca |
16327393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 4311532 - 4311315
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4311532 |
ttgtacatgtgggttagtaccaacgtaaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaata |
4311433 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||| || |||||||| |||||| |||| ||||||||||||| | ||||||| |
|
|
| T |
4311432 |
attctccattcatattggtaattgtgagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcc |
4311333 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
4311332 |
tcttgatctcttgattca |
4311315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 9581707 - 9581490
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9581707 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaata |
9581608 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
|| |||||| ||||||| |||||||||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||| || |||||||||| |
|
|
| T |
9581607 |
atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc |
9581508 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9581507 |
tcttgatcccttgattca |
9581490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 9729559 - 9729342
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
9729559 |
ttgtacctgtggattagtaccaacataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaata |
9729460 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
|| |||||| ||||||| |||||||||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||| || |||||||||| |
|
|
| T |
9729459 |
atcctccattcatattgataattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc |
9729360 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9729359 |
tcttgatcccttgattca |
9729342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 8783498 - 8783715
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| || |||| |
|
|
| T |
8783498 |
ttgtacatgtgggttagtaccaacataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaata |
8783597 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||| | |||||| |||||||||||||||| |||||||| ||||||| | |||||| |||||| |||| ||||||||||||| | ||||||| |
|
|
| T |
8783598 |
attctcctttcatatttgtaattgtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatcc |
8783697 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
8783698 |
ccttgatccattgattca |
8783715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 14223144 - 14223276
Alignment:
| Q |
108 |
caattagctctaatgattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataat |
201 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14223144 |
caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat |
14223243 |
T |
|
| Q |
202 |
agttctcatctatcctcttgatcccttgattca |
234 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| |
|
|
| T |
14223244 |
agttctcctctttcctcttgatcccttgattca |
14223276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 23513873 - 23513736
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||| |
|
|
| T |
23513873 |
tgtacctgtgggttagtgccaacataaacaaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattga |
23513774 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| ||||| |||||||||||| |||| ||||| |
|
|
| T |
23513773 |
ctctccactcatataggtaattgtgagaagggccatgg |
23513736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 4462117 - 4462244
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||| ||| || ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4462117 |
tgtaccagtgggttagtaccaatataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatga |
4462216 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagt |
151 |
Q |
| |
|
|| || | ||||||||| ||||||||| |
|
|
| T |
4462217 |
ttttctaatcatattggtcattgtgagt |
4462244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 13741225 - 13741088
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||| ||||| |||||||||| | ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| | || ||| |
|
|
| T |
13741225 |
tgtacctgtggattagtgccaacataaacatagttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattga |
13741126 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||| |
|
|
| T |
13741125 |
ctctccactcatattggtaattgtgagaagggccatgg |
13741088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 5395944 - 5395811
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
5395944 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
5395845 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtc |
157 |
Q |
| |
|
||||| ||| ||||||||||| || |||||| |
|
|
| T |
5395844 |
cgctccactcattttggtaattgttagaagggtc |
5395811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 12565807 - 12565670
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||| |||||||||| ||||||||| || ||||||||| ||||||||| ||||||| || ||| |
|
|
| T |
12565807 |
tgtaccggtgggttagtaccaacataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattga |
12565708 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| ||||||||||||||| || |||| ||||| |
|
|
| T |
12565707 |
ctctccactcatattggtaattgttagaagggccatgg |
12565670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 10439748 - 10439888
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||||||| | | |||||||| || |||||||||||||||||||| ||||| | || ||| |
|
|
| T |
10439748 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattga |
10439847 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgggtt |
164 |
Q |
| |
|
|||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
10439848 |
ctctccactcatattggtaattgtgagaagggctatgggtt |
10439888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 22062919 - 22063131
Alignment:
| Q |
22 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22062919 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
22063018 |
T |
|
| Q |
122 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
221 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063019 |
gattctccatgcatgttggtaattgtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttg |
22063118 |
T |
|
| Q |
222 |
atcccttgattca |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
22063119 |
atcccttgattca |
22063131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 18188979 - 18189116
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
18188979 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattga |
18189078 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |
|
|
| T |
18189079 |
ctctccactcatattggtaattgtgagaagggtcatgg |
18189116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 23519161 - 23519314
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||| ||| | | |
|
|
| T |
23519161 |
tgtacccgtgggttagttccaacataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctattta |
23519260 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgaca |
177 |
Q |
| |
|
| ||| |||||||||| ||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
23519261 |
ctttccgcacatattggtagttgtgagaagggtcatgggttataaggaaagaca |
23519314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 19586983 - 19587185
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19586983 |
ttgtacctgtgggttaataccaacataaatcaaattttccaccacctccagatta---------------ggtagaataatcaaacaattagctctaata |
19587067 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||| | |||||||||||||| |||||| |||||||| ||||||| |||||||| |||||| |||| ||||||||||||| ||||||| |
|
|
| T |
19587068 |
attctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgagagtatataagtgtagataatagttcctctctatcc |
19587167 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19587168 |
tcttgatcccttgattca |
19587185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 17818320 - 17818194
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
17818320 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
17818221 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgag |
150 |
Q |
| |
|
|||||| |||||||||||||||||| |
|
|
| T |
17818220 |
ctctccactcatattggtaattgtgag |
17818194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 18852823 - 18852742
Alignment:
| Q |
22 |
tttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaa |
106 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| |||| ||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
18852823 |
tttgtacctgtgggttagtgccaacataaa---aattttctaccatctccggattagtaatatctgaattaggtagaataatcaa |
18852742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 29685338 - 29685293
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacc |
68 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29685338 |
ttgtacctgtgggttagtactaacataaagcaaattttccaccacc |
29685293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24390285 - 24390326
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccacc |
65 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
24390285 |
tgtacctgtttgttagtaccagcataaagcaaattttccacc |
24390326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 20001103 - 20000886
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20001103 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
20001004 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20001003 |
attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc |
20000904 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
20000903 |
tcttgatcccttgattca |
20000886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 20040479 - 20040615
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | | ||||| |||||||| ||||||||||| || |||||||||||||||||||| |||||| || ||| |
|
|
| T |
20040479 |
tgtacctgtgggttagtgccaacataaacctagttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattga |
20040578 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| |
|
|
| T |
20040579 |
ctctccactcatattggtaattgtgagaagggccatg |
20040615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 21855186 - 21855323
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||| ||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
21855186 |
tgtacctgtaggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
21855282 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgggtt |
164 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||||| |
|
|
| T |
21855283 |
ctctccactcatattggtaattgtgagaagggttatgggtt |
21855323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 17619545 - 17619412
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
17619545 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
17619449 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| |||||||| ||||||||| |||| |||| |
|
|
| T |
17619448 |
ctctccactcatattggaaattgtgagaagggccatg |
17619412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 29566 - 29349
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
29566 |
ttgtacctgtgggttagtaccaacataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatg |
29467 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
29466 |
attctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcc |
29367 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
29366 |
tcttgatcccttgattca |
29349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 51962 - 52179
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51962 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaata |
52061 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||||||||| || ||||||| |
|
|
| T |
52062 |
attctccattcatattggtaattgtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcc |
52161 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
52162 |
tcttgatcccttgattca |
52179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 23712116 - 23712333
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatg |
122 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
23712116 |
ttgtacctgtgggttaggaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaata |
23712215 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcc |
216 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||| |||||| ||||||| || |||||||||| |
|
|
| T |
23712216 |
atcctccattcatattggtaattgtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcc |
23712315 |
T |
|
| Q |
217 |
tcttgatcccttgattca |
234 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
23712316 |
tcttgatcccttgattca |
23712333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 20446255 - 20446386
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
20446255 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
20446354 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtaggg |
155 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |
|
|
| T |
20446355 |
ctctccactcatattggtaattgtgagaaggg |
20446386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 21282320 - 21282458
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatg |
122 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| ||||| || || |
|
|
| T |
21282320 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattg |
21282419 |
T |
|
| Q |
123 |
attctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
| |||||| |||||||||||||||||| ||||| |||| |
|
|
| T |
21282420 |
actctccactcatattggtaattgtgagaagggttatgg |
21282458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 147
Target Start/End: Original strand, 18487473 - 18487596
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||| |||||| |||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
18487473 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattga |
18487572 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgt |
147 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
18487573 |
ctctccactcatattggtaattgt |
18487596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 23602050 - 23602173
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| |||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
23602050 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
23602146 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgag |
150 |
Q |
| |
|
|| ||| |||||||| ||||||||| |
|
|
| T |
23602147 |
ctcgccactcatattgggaattgtgag |
23602173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 24939334 - 24939200
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| || ||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
24939334 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
24939238 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|| ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
24939237 |
ctcgccactcatattgggaattgtgagaagggccatgg |
24939200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 24218633 - 24218516
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||| ||||||||||| ||||||||| | ||||| |||| ||||||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
24218633 |
tgtacatgtgggttagtgccaacataat---agttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
24218537 |
T |
|
| Q |
124 |
ttctccatgcatattggtaat |
144 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
24218536 |
ctctccactcatattggtaat |
24218516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0485 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0485
Description:
Target: scaffold0485; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 11313 - 11531
Alignment:
| Q |
23 |
ttgtacctgtgggttagtaccaacataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11313 |
ttgtacctgtgggttagtaccaacataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaat |
11412 |
T |
|
| Q |
122 |
gattctccatgcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatc |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||||||| |||| |||| ||||||||||||| | |||||| |
|
|
| T |
11413 |
aattctccactcatattggtaattgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatc |
11512 |
T |
|
| Q |
216 |
ctcttgatcccttgattca |
234 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11513 |
ctcttgatcccttgattca |
11531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 24501134 - 24500997
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
24501134 |
tgtacctgtgggttagtgccaacataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattga |
24501035 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
24501034 |
ctctccactaatattggtaattgtgagaagggccatgg |
24500997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 24 - 169
Target Start/End: Original strand, 25339516 - 25339661
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||| |||| |||||| ||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
25339516 |
tgtacatgtgagttagtgccaacataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattga |
25339615 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgggttttaag |
169 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||| ||| |||| |
|
|
| T |
25339616 |
ccttccactcatattggtaattgtgagttgggccatgagttctaag |
25339661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0222 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0222
Description:
Target: scaffold0222; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 18632 - 18509
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
18632 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
18533 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgt |
147 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
18532 |
ctctccactcatattggtaattgt |
18509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 11741 - 11860
Alignment:
| Q |
42 |
ccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggt |
141 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||| || ||| |||||| ||||||||| |
|
|
| T |
11741 |
ccaacataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggt |
11840 |
T |
|
| Q |
142 |
aattgtgagtagggtcatgg |
161 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
11841 |
aattgtgagaagggtcatgg |
11860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 160
Target Start/End: Complemental strand, 1411 - 1275
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||| ||||||||| |||||||||| || |||||||||||||||||||| ||||||| | ||| |
|
|
| T |
1411 |
tgtacctgtgggttagtgccaacataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattga |
1312 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatg |
160 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||| |
|
|
| T |
1311 |
ctctccactcatattggtaattgttagaagggtcatg |
1275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
| Q |
57 |
ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaattgtgagtagggt |
156 |
Q |
| |
|
||||| |||||||| | ||||||||| ||||||||||||||||||||||| |||||||| || ||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
17138 |
ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt |
17039 |
T |
|
| Q |
157 |
catgg |
161 |
Q |
| |
|
||||| |
|
|
| T |
17038 |
catgg |
17034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0113 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0113
Description:
Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 161
Target Start/End: Original strand, 38043 - 38177
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatga |
123 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||| | ||||||||| || |||||||||||||||||||| ||||||| || ||| |
|
|
| T |
38043 |
tgtacctgtgggttagtgccaacataaa---agttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattga |
38139 |
T |
|
| Q |
124 |
ttctccatgcatattggtaattgtgagtagggtcatgg |
161 |
Q |
| |
|
|| ||| |||||||| ||||||||| |||| ||||| |
|
|
| T |
38140 |
ctcgccactcatattggaaattgtgagaagggccatgg |
38177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1184 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1184
Description:
Target: scaffold1184; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 31 - 65
Target Start/End: Original strand, 537 - 571
Alignment:
| Q |
31 |
gtgggttagtaccaacataaagcaaattttccacc |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
537 |
gtgggttagtaccaacataaagcaaattttccacc |
571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 12854 - 12930
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat |
103 |
Q |
| |
|
||||||||||||||||| ||||||||| || ||||| ||||||||| |||||||||| || | |||||||||||||| |
|
|
| T |
12854 |
tgtacctgtgggttagtgccaacataa---aagttttctaccacctccagattagtaatatctaatttaggtagaataat |
12930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 8745 - 8821
Alignment:
| Q |
24 |
tgtacctgtgggttagtaccaacataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataat |
103 |
Q |
| |
|
||||| ||||||||||| |||||||||| | ||||| ||||||||| |||||||||| || | |||||||||||||| |
|
|
| T |
8745 |
tgtacatgtgggttagtgccaacataaa---agttttctaccacctccagattagtaatatctaatttaggtagaataat |
8821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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