View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4934_low_3 (Length: 596)
Name: NF4934_low_3
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 1 - 581
Target Start/End: Original strand, 36330090 - 36330670
Alignment:
| Q |
1 |
ttcttactaataatacatggtcatcaacttaacaaacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgttaaaccctaatgagttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330090 |
ttcttactaataatacatggtcatcaacttaacatacaaattaaagtttgacttgtaaaatttaaaagcacccaagtatgttaaaccctaatgagttaac |
36330189 |
T |
|
| Q |
101 |
ttcataaatcaatgttgtcaaactcaattgtaaacaagatcattaccttgttaagtctagaaccatcatttctatgaggttccagtactagtgcagctac |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
36330190 |
ttcacaaatcaatgttgtcaaactcaattgtaaacaacatcattaccttgttaagtctagaaccatcatctctatgagcttccagtactagtgcagctac |
36330289 |
T |
|
| Q |
201 |
ttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330290 |
ttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgca |
36330389 |
T |
|
| Q |
301 |
tctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330390 |
tctctgtttgtctgaataaaaggctgatactttgtgacatacttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaa |
36330489 |
T |
|
| Q |
401 |
gtggtgtatgcatagttctagcattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggt |
500 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330490 |
gtggtgtatgcatagttctaccattcttctcaattgattgaaccctaatctttagtttattgtgatcaacaaaatttggattaagaagatcctctatggt |
36330589 |
T |
|
| Q |
501 |
aatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaacttcttattctctgcatt |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36330590 |
aatgagtccatcaccacacacaacaacctcgcaactaggatcaaaagcatcactcatcatcaacttcttattctctgcatt |
36330670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 421
Target Start/End: Original strand, 44369379 - 44369613
Alignment:
| Q |
187 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
286 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
44369379 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
44369478 |
T |
|
| Q |
287 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
386 |
Q |
| |
|
| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
|
|
| T |
44369479 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
44369578 |
T |
|
| Q |
387 |
atcagcctctggaagtggtgtatgcatagttctag |
421 |
Q |
| |
|
||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
44369579 |
atctgcctttggaagtggtgcatgaacagttctag |
44369613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 227 - 435
Target Start/End: Original strand, 52929484 - 52929692
Alignment:
| Q |
227 |
taaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaaggatatagtcgttgcatctctgtttgtctgaataaaaggctg |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| | | ||| || || || ||| ||||||||| | || |
|
|
| T |
52929484 |
taaattcagaagctatagctcctatagttgaaaaccctagatctatcttttcatcaaagtacacagtaagagcctccctatttctctgaataatggattg |
52929583 |
T |
|
| Q |
327 |
atactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttgatcagcctctggaagtggtgtatgcatagttctagcattc |
426 |
Q |
| |
|
|| ||||||| || || |||||||| |||| || ||||||||||||||||| |||||||| |||| ||||||||||| ||| | |||||||| | | |
|
|
| T |
52929584 |
ccaccttgtgacttgtttctttgatatttcatacgccaccttcctttctacctttgcttgatctgcctttggaagtggtgcatgaacagttctagaacta |
52929683 |
T |
|
| Q |
427 |
ttctcaatt |
435 |
Q |
| |
|
||||||||| |
|
|
| T |
52929684 |
ttctcaatt |
52929692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 187 - 421
Target Start/End: Complemental strand, 20238098 - 20237864
Alignment:
| Q |
187 |
actagtgcagctacttctctctcaaatttagatcttggtctaaattcagaagctatagctcctatagttgaaaaccctatatctactttttcataaaagg |
286 |
Q |
| |
|
||||||||||| | || |||||||||| || ||| ||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
20238098 |
actagtgcagccattttcctctcaaattcagttctgggttcaaattcagaagctattgctcctatagttgaaaaccctagatctgtcttttcatcaaagt |
20237999 |
T |
|
| Q |
287 |
atatagtcgttgcatctctgtttgtctgaataaaaggctgatactttgtgacatgcttttttgatataacatatgctaccttcctttctaccttggcttg |
386 |
Q |
| |
|
| |||| | || || || ||| ||||||||| || || |||||||||| || | || ||||| ||| || ||||||||||| ||||| ||||| |
|
|
| T |
20237998 |
acttagtaggagcctccctatttttctgaataaggggttgccactttgtgacttgttccttagatatttgatacgccaccttcctttccaccttcgcttg |
20237899 |
T |
|
| Q |
387 |
atcagcctctggaagtggtgtatgcatagttctag |
421 |
Q |
| |
|
||| |||| ||||||||||| ||| | |||||||| |
|
|
| T |
20237898 |
atctgcctttggaagtggtgcatgaacagttctag |
20237864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University