View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_4 (Length: 574)
Name: NF4934_low_4
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 138 - 459
Target Start/End: Original strand, 52667909 - 52668228
Alignment:
| Q |
138 |
gaaaagttgacaaacagaatagattaaccattttaaacattctttttctcaaaatatttcattcataaaaaagataatctcaaaccctctctccatcttc |
237 |
Q |
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| T |
52667909 |
gaaaagttgacaaacagaatagattaaccattttaaacattccttttctcaaaatatttcattcataaaaaagataatctcaaaccctctctccatcttc |
52668008 |
T |
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| Q |
238 |
taaaccatgttcaaatcgtttcatatcaaatttaaaccctatgctctaaatcattatttagtgtcatccaattgaa-gattaaattcacacatcaacaat |
336 |
Q |
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| T |
52668009 |
taaaccatgttcaaatcgtttcatatcaaatttaaaccctatgctctaaatcattatttagtgtcatccaattgaaggattaaattcacacatcaacaat |
52668108 |
T |
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| Q |
337 |
accagaataataatcaatagtaaaattgataaatccctaaaaagtcgctaacgatggatgcaacaacagttagatccctaaactaaggaaatgaaaaacc |
436 |
Q |
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| T |
52668109 |
accagaataataatcaatagtaaaattgataaatccctaaaaagtcgctaacaatggatgcaacaa---ttagatccctaaactaaggaaatgaaaaacc |
52668205 |
T |
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| Q |
437 |
ctagtgcggttataatttcgaat |
459 |
Q |
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| T |
52668206 |
ctagtgcggttataatttcgaat |
52668228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 2 - 139
Target Start/End: Original strand, 52667715 - 52667852
Alignment:
| Q |
2 |
gaacttaatcctcatttcttaaaatttcaagaatcaaataatttcatctgtttcctctaacttaaaacccttaaatcccaacactttttggtcactatta |
101 |
Q |
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| T |
52667715 |
gaacttaatcctcatttcttaaaatttcaagaatcaaataatttcatcagtttcctctaacttaaaacccttaaatcccaacactttttggtcactatta |
52667814 |
T |
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| Q |
102 |
tgagcaaaaaatcacttttagattcattaaacagctga |
139 |
Q |
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| T |
52667815 |
tgagcaaaaaatcacttttagattcattaaacaactga |
52667852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 492 - 555
Target Start/End: Original strand, 52668273 - 52668336
Alignment:
| Q |
492 |
caattttgagagtaattacgaaccagtttcttggatccatttcccttctcgaggtgttccttcc |
555 |
Q |
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| T |
52668273 |
caattttgagagtaattacgaaccagtttcttggatccatttcccttctcgaggtgttccttcc |
52668336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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