View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4934_low_6 (Length: 496)
Name: NF4934_low_6
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 149 - 487
Target Start/End: Complemental strand, 44853370 - 44853033
Alignment:
| Q |
149 |
agctaatctctacttcacacgttatactcaagttttaaaaaattcaatgatatagactctctgattataatgcattttccagatttacaatatcatgttt |
248 |
Q |
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| T |
44853370 |
agctaatctctacttcacacgttatactcaagttttaaaaaattcaatgatatagactctctgattataatgcattttccagatttacaatatcatgttt |
44853271 |
T |
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| Q |
249 |
cnnnnnnngtcaagactttgttggattggattgagatttatagtttcattaaagtgannnnnnngctttctacatcaatataggaaatttatgtatgaaa |
348 |
Q |
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| T |
44853270 |
ctttttt-gtcaagactttgttggattggattgagatttatagtttcattaaagtgatttttttgctttctacatcaatataggaaatttatgtatgaaa |
44853172 |
T |
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| Q |
349 |
ctaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagctgaattggatcccctg |
448 |
Q |
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| T |
44853171 |
ctaattacattataatttgtagtgctactaagagctacaagctgtaaaatgttttgcatggatactcattctcatgtgttgagctgaattggatcccctg |
44853072 |
T |
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| Q |
449 |
gtatatatagcgaatgttttttaagttttacattttctt |
487 |
Q |
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| T |
44853071 |
gtatatatagcgaatgttttttaagttttacattttctt |
44853033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 44853566 - 44853421
Alignment:
| Q |
1 |
gtccaaatgtgaattatattcaattgtatgtatannnnnnnaaaggttcttgctaaccagtgcccggggcacttgttagcatttccctttaaataattat |
100 |
Q |
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| T |
44853566 |
gtccaaatgtgaattatattcaattgtatgtatatttttttaaaggttcttgctaaccggtgcccggggcacttgttagcatttccctttaaataattat |
44853467 |
T |
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| Q |
101 |
cactgttgacgttttagggttgtgtctgcgtgtacgtgtcagtgtg |
146 |
Q |
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| T |
44853466 |
aagtgttgacgttttagggttgtgtctgcgtgtacgtgtcagtgtg |
44853421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 92
Target Start/End: Original strand, 3026160 - 3026198
Alignment:
| Q |
54 |
taaccagtgcccggggcacttgttagcatttccctttaa |
92 |
Q |
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| T |
3026160 |
taaccagtgcccggggcaccagttagcatttccctttaa |
3026198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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