View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4934_low_7 (Length: 495)
Name: NF4934_low_7
Description: NF4934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4934_low_7 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 5250577 - 5251064
Alignment:
| Q |
1 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250577 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccattccaccgag |
5250676 |
T |
|
| Q |
101 |
acccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250677 |
acccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccatatatgctc |
5250776 |
T |
|
| Q |
201 |
aattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactag---------catgtttcaatccaagcatat |
291 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
5250777 |
gattcatccaccaaagctgtagttggaaatctatctaagggtttccaactaacgccaccttcactactagcaaaagcctcatgtttcaatccgagcatat |
5250876 |
T |
|
| Q |
292 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagt |
391 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250877 |
ccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagt |
5250976 |
T |
|
| Q |
392 |
agaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgt |
479 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5250977 |
agaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgt |
5251064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 5268464 - 5268951
Alignment:
| Q |
1 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgag |
100 |
Q |
| |
|
|||| |||||||||||||| |||||| ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
5268464 |
tttccgaaacatagacccaggctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccattccaccgag |
5268563 |
T |
|
| Q |
101 |
acccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268564 |
acccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctg |
5268663 |
T |
|
| Q |
201 |
aattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcatat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
5268664 |
gattcatccaccaaagatgtagttggcaatctatctaagggtttccaactaactccaccttcactactagcacaagcgtcttgttttaatccaagcatat |
5268763 |
T |
|
| Q |
292 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagt |
391 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
5268764 |
gcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatgaagtcgaataccttgctagt |
5268863 |
T |
|
| Q |
392 |
agaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgt |
479 |
Q |
| |
|
||||| |||||||||| |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268864 |
agaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgt |
5268951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 479
Target Start/End: Complemental strand, 4388558 - 4388077
Alignment:
| Q |
1 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388558 |
tttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccattccaccgag |
4388459 |
T |
|
| Q |
101 |
acccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctc |
200 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||||||||||||| |
|
|
| T |
4388458 |
acccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccatatatgctc |
4388359 |
T |
|
| Q |
201 |
aattcatccaccaaagatgtagttggcaatc-tatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcata |
290 |
Q |
| |
|
|| |||||||||||||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||||| ||||||| ||| |||||| |
|
|
| T |
4388358 |
gatccatccaccaaagatgtagttggaaatcttatc-aagggtttccaactgagtccaccttcactactagcacaggtgtcttgtttcagtccgagcata |
4388260 |
T |
|
| Q |
291 |
tccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctag |
390 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||| | |||||||| |||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
4388259 |
tccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaagaagttgaataccttgctag |
4388160 |
T |
|
| Q |
391 |
tagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgt |
479 |
Q |
| |
|
|||| || |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4388159 |
taga------aggttcaaatttctgcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgt |
4388077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 5299139 - 5299568
Alignment:
| Q |
1 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgag |
100 |
Q |
| |
|
|||| |||||||||||||| ||||| |||||||| || | ||| ||| ||| || ||||||||||| |||||||| ||||| || ||||||||||| || |
|
|
| T |
5299139 |
tttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattccacctag |
5299238 |
T |
|
| Q |
101 |
acccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||||| || |||||||| ||| ||| ||||| |||||||||||||| |||||||||||| |
|
|
| T |
5299239 |
acccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatatatgctc |
5299338 |
T |
|
| Q |
201 |
aattcatccaccaaagatgtagttggcaatctatctaagggtttccaaataactccaccttcactactagca---------tgtttcaatccaagcatat |
291 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||| | ||||||| ||| |||||||| |||||||| ||||| || || | ||||| |
|
|
| T |
5299339 |
gattcatccaccaaagatgtacttggcaatctttttaaagctttccaaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatat |
5299438 |
T |
|
| Q |
292 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttgctagt |
391 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||| | |||||||||||||| |||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5299439 |
ccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagt |
5299538 |
T |
|
| Q |
392 |
agaagattgagattcagctttcagcttctt |
421 |
Q |
| |
|
||||| |||||| ||| ||||||||||||| |
|
|
| T |
5299539 |
agaaggttgagaatcaactttcagcttctt |
5299568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 2 - 211
Target Start/End: Original strand, 8455063 - 8455272
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| |||||||| || || | | |
|
|
| T |
8455063 |
ttctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatccctcctaaa |
8455162 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctca |
201 |
Q |
| |
|
|| ||||||||||||||||| || ||||||||||| || || | | |||||||| |||||||| | ||||| ||| |||||| ||||||||||||| |
|
|
| T |
8455163 |
ccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccatatatgctcg |
8455262 |
T |
|
| Q |
202 |
attcatccac |
211 |
Q |
| |
|
| |||||||| |
|
|
| T |
8455263 |
actcatccac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 2 - 199
Target Start/End: Original strand, 6736399 - 6736596
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | | |
|
|
| T |
6736399 |
ttctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaa |
6736498 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
199 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||| || | | |||||||| ||||||| | ||||| ||| ||||||||||||||||||| |
|
|
| T |
6736499 |
cccactatgctaattattggaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatatgct |
6736596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 2 - 197
Target Start/End: Original strand, 6947678 - 6947873
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||||||| |||||||| | |||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | | |
|
|
| T |
6947678 |
ttctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatccctcctaaa |
6947777 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
197 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| || | | |||||||| |||||||||| ||||| ||| ||||||||||||||||| |
|
|
| T |
6947778 |
cccactatgctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccatatatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 6448402 - 6448286
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||| ||||| ||||||||||||||| ||||| ||| |
|
|
| T |
6448402 |
ttctgaaacatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatcccacccaga |
6448303 |
T |
|
| Q |
102 |
cccactatgctgattat |
118 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6448302 |
cccactatgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 6554058 - 6553861
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | | |
|
|
| T |
6554058 |
ttctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaa |
6553959 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
199 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||| || | |||||||| |||||||| | ||||| ||| |||| |||||||||||||| |
|
|
| T |
6553958 |
cccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccctaccatatatgct |
6553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 275 - 454
Target Start/End: Complemental strand, 6448120 - 6447941
Alignment:
| Q |
275 |
tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag |
374 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||||| | || || |||| |||||| ||| | |||||||| ||||||||||| | | || || || |||| |
|
|
| T |
6448120 |
tttcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaag |
6448021 |
T |
|
| Q |
375 |
tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacag |
454 |
Q |
| |
|
| ||| | ||||||||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6448020 |
ttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaacag |
6447941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 6479602 - 6479405
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||| ||| ||| || |||||||||||||| |||||| ||||| || ||||| || || | | |
|
|
| T |
6479602 |
ttctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatccctcctaaa |
6479503 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgct |
199 |
Q |
| |
|
|| |||||||||||||| || || ||| | |||||||| || | | |||||||| ||||| | || ||||||||| ||||||| ||||||||||| |
|
|
| T |
6479502 |
ccaactatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccatatatgct |
6479405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 8590142 - 8590347
Alignment:
| Q |
6 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
105 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || || | ||| | |
|
|
| T |
8590142 |
gaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctcctaaaccga |
8590241 |
T |
|
| Q |
106 |
ctatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattc |
205 |
Q |
| |
|
|||||||||||||||| || |||||||||| || || | | |||||||| ||||||| | | ||| ||| |||||||||||||||||||| | || |
|
|
| T |
8590242 |
ctatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccatatatgctcgactc |
8590341 |
T |
|
| Q |
206 |
atccac |
211 |
Q |
| |
|
|||||| |
|
|
| T |
8590342 |
atccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 2 - 218
Target Start/End: Complemental strand, 6721683 - 6721467
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||| |||||||||||||||||||||| | |||||| ||||||||||| ||||| |||||||| ||||| || |||||||| || ||| ||| |
|
|
| T |
6721683 |
ttctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtcttacctatcccaatcaga |
6721584 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctca |
201 |
Q |
| |
|
|||||||| |||||||| || || |||||| ||||||| | ||||| || || |||||||||| || || || ||| |||| |||||||||| | |
|
|
| T |
6721583 |
cccactatactgattatgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctctcgaccatatatgaccg |
6721484 |
T |
|
| Q |
202 |
attcatccaccaaagat |
218 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
6721483 |
attcatccaccaaagat |
6721467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 6519782 - 6519647
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || || ||| ||| ||||| ||| | |||||||| ||||| ||||||||||| || | | |
|
|
| T |
6519782 |
ttctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccattcctcctaaa |
6519683 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactg |
137 |
Q |
| |
|
|||||||||||||||||||| || ||||| |||||| |
|
|
| T |
6519682 |
cccactatgctgattattggaacctggttaccactg |
6519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 232
Target Start/End: Original strand, 8471977 - 8472200
Alignment:
| Q |
9 |
acatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccacta |
108 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||| | |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||| | |||||||| |
|
|
| T |
8471977 |
acatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccacta |
8472076 |
T |
|
| Q |
109 |
tgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatc |
208 |
Q |
| |
|
||||||| ||| ||| ||||||||| |||| ||| ||| || ||| | |||||||| || || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
8472077 |
tgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatc |
8472176 |
T |
|
| Q |
209 |
caccaaagatgtagttggcaatct |
232 |
Q |
| |
|
||| ||||||| ||||||| |||| |
|
|
| T |
8472177 |
cactaaagatgcagttggcgatct |
8472200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 8568568 - 8568338
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||| || ||| ||||||| ||||| ||||| ||||||| |||||||||||||| ||||| ||| |
|
|
| T |
8568568 |
ttctgaaacatggacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatcccacctaga |
8568469 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctca |
201 |
Q |
| |
|
||||| || || |||| ||||||||||||| || |||| | || ||| ||||||||| | | || ||| |||||||||||||||||| |
|
|
| T |
8568468 |
cccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccatatatgcaag |
8568369 |
T |
|
| Q |
202 |
attcatccaccaaagatgtagttggcaatct |
232 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |
|
|
| T |
8568368 |
attcatccaccaaagacgcagttggcaatct |
8568338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 197
Target Start/End: Complemental strand, 6590945 - 6590753
Alignment:
| Q |
5 |
tgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| | ||||| || ||||||||||| ||| | |||| |
|
|
| T |
6590945 |
tgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatcccaatcataccc |
6590846 |
T |
|
| Q |
105 |
actatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
197 |
Q |
| |
|
||||| | |||||| |||||||||||| ||||| |||| || |||||||| || |||| ||||| || ||| ||||||||||||||| |
|
|
| T |
6590845 |
actatacagattatgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccatatatg |
6590753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 2 - 117
Target Start/End: Original strand, 5281093 - 5281208
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | || || | |||||| |||||||||| |||||| |||||||||||||| ||||| | |
|
|
| T |
5281093 |
ttctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatcccaccagaa |
5281192 |
T |
|
| Q |
102 |
cccactatgctgatta |
117 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
5281193 |
cccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 13270208 - 13270086
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| || ||| |
|
|
| T |
13270208 |
ttctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccccatcaga |
13270109 |
T |
|
| Q |
102 |
cccactatgctgattattggtac |
124 |
Q |
| |
|
|||||||| |||||||| ||||| |
|
|
| T |
13270108 |
cccactatactgattatgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 2 - 125
Target Start/End: Original strand, 7750436 - 7750559
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| | |||| || ||||||||||| ||| | | |
|
|
| T |
7750436 |
ttctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagtcgggcaatggttgtcttacccatcccaatcaca |
7750535 |
T |
|
| Q |
102 |
cccactatgctgattattggtaca |
125 |
Q |
| |
|
|||||||| |||||||| |||||| |
|
|
| T |
7750536 |
cccactatactgattatgggtaca |
7750559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 172
Target Start/End: Original strand, 6882941 - 6883111
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| || ||||| ||||||||||| || ||| |
|
|
| T |
6882941 |
ttctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatccccatcaga |
6883040 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctc |
172 |
Q |
| |
|
|||||||| || ||||| ||| || ||||| |||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
6883041 |
cccactatactaattatgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctc |
6883111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 197
Target Start/End: Original strand, 6259595 - 6259786
Alignment:
| Q |
6 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
105 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||| || ||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagaccca |
6259694 |
T |
|
| Q |
106 |
ctatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
197 |
Q |
| |
|
|||| |||||||| | ||| ||||| | ||| |||| || |||||||| ||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6259695 |
ctatactgattatggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg |
6259786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 6266127 - 6266249
Alignment:
| Q |
1 |
tttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgag |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | |||||||| || || || |
|
|
| T |
6266127 |
tttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatccccgtcag |
6266226 |
T |
|
| Q |
101 |
acccactatgctgattattggta |
123 |
Q |
| |
|
||||||||| |||||||| |||| |
|
|
| T |
6266227 |
acccactatactgattatgggta |
6266249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 226
Target Start/End: Complemental strand, 6838466 - 6838297
Alignment:
| Q |
57 |
ttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaa |
156 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| ||||| | ||| ||||||||||| ||| ||| ||||||||| |||| ||| |||||| ||| |
|
|
| T |
6838466 |
ttgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaat |
6838367 |
T |
|
| Q |
157 |
aattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttgg |
226 |
Q |
| |
|
| || |||| || || || ||||| ||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
6838366 |
agttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttgg |
6838297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 124
Target Start/End: Original strand, 6142726 - 6142842
Alignment:
| Q |
8 |
aacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccact |
107 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||| ||||||||||| ||||| | || ||| ||||| || |||||||| || ||| ||||| ||| |
|
|
| T |
6142726 |
aacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagggttgtcttacctatcccaggaagacctact |
6142825 |
T |
|
| Q |
108 |
atgctgattattggtac |
124 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
6142826 |
atactgattatgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 6900529 - 6900662
Alignment:
| Q |
6 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
105 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| ||| ||| ||| | ||| |||||||| || || || ||||||||||| ||| | ||||| |
|
|
| T |
6900529 |
gaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatcccaatcacaccca |
6900628 |
T |
|
| Q |
106 |
ctatgctgattattggtacatggttgccactgtc |
139 |
Q |
| |
|
||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
6900629 |
ctacactgattatgggtacttggttgcgactgtc |
6900662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 369
Target Start/End: Complemental strand, 6838222 - 6838145
Alignment:
| Q |
292 |
ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaa |
369 |
Q |
| |
|
||||||||| ||||||| ||| ||||| ||||||| ||| | |||||||| |||||||||||||||| || ||||| |
|
|
| T |
6838222 |
ccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaa |
6838145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 469
Target Start/End: Original strand, 6948089 - 6948157
Alignment:
| Q |
401 |
agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcata |
469 |
Q |
| |
|
|||||||||||||||||| || || ||||||||| | ||||||||||||||| ||||| ||||||| |
|
|
| T |
6948089 |
agattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcata |
6948157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 2 - 139
Target Start/End: Complemental strand, 7097 - 6960
Alignment:
| Q |
2 |
ttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgaga |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| || ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || || | | |
|
|
| T |
7097 |
ttctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctcctaaa |
6998 |
T |
|
| Q |
102 |
cccactatgctgattattggtacatggttgccactgtc |
139 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| |
|
|
| T |
6997 |
cccactatgctgattattggaacctggttgccactgtc |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 9 - 232
Target Start/End: Complemental strand, 6572911 - 6572688
Alignment:
| Q |
9 |
acatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccacta |
108 |
Q |
| |
|
|||| ||||||||||||||| ||||| || | || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||| | |||||||| |
|
|
| T |
6572911 |
acatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccacta |
6572812 |
T |
|
| Q |
109 |
tgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatc |
208 |
Q |
| |
|
|||||||||||| ||| |||||| | ||||| ||| || || ||| ||||||| || || || ||||| |||||||||||||||| ||| ||| |
|
|
| T |
6572811 |
tgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctctaccatatatgcaagatttatc |
6572712 |
T |
|
| Q |
209 |
caccaaagatgtagttggcaatct |
232 |
Q |
| |
|
||||| ||||| ||||||| |||| |
|
|
| T |
6572711 |
caccagagatgcagttggcgatct |
6572688 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 35140004 - 35139943
Alignment:
| Q |
6 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaag |
67 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
35140004 |
gaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaag |
35139943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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