View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4935-Insertion-1 (Length: 701)

Name: NF4935-Insertion-1
Description: NF4935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4935-Insertion-1
NF4935-Insertion-1
[»] chr1 (4 HSPs)
chr1 (543-684)||(45511709-45511854)
chr1 (10-52)||(45511670-45511712)
chr1 (654-697)||(5328037-5328080)
chr1 (654-696)||(5328685-5328727)
[»] chr7 (3 HSPs)
chr7 (653-701)||(37623928-37623976)
chr7 (654-694)||(37622827-37622867)
chr7 (654-698)||(44520328-44520372)
[»] chr8 (4 HSPs)
chr8 (654-701)||(39069086-39069133)
chr8 (654-701)||(39070194-39070241)
chr8 (654-696)||(11690853-11690895)
chr8 (654-698)||(42737352-42737396)
[»] chr2 (9 HSPs)
chr2 (656-701)||(518296-518341)
chr2 (654-701)||(27478902-27478949)
chr2 (654-696)||(519631-519673)
chr2 (654-701)||(10454505-10454552)
chr2 (654-701)||(24460563-24460610)
chr2 (657-695)||(27477848-27477886)
chr2 (654-698)||(7575455-7575499)
chr2 (657-701)||(20606110-20606154)
chr2 (657-701)||(21178443-21178487)
[»] chr3 (2 HSPs)
chr3 (654-701)||(54410584-54410631)
chr3 (654-701)||(55136397-55136444)
[»] chr4 (2 HSPs)
chr4 (654-698)||(13861754-13861798)
chr4 (654-701)||(47649533-47649580)
[»] chr5 (2 HSPs)
chr5 (654-698)||(31547661-31547705)
chr5 (654-698)||(37272550-37272594)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 7e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 543 - 684
Target Start/End: Original strand, 45511709 - 45511854
Alignment:
Q  543 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttgagtcttgatacatcatcttaaaaggacctaaacaggat 642  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45511709 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttcagtcttgatacatcatcttaaaaggacctaaacaggat 45511808  T
Q  643 t----nnnnnnnnngaagataaaagactaatgtgttacaaataaat 684  Q
    |             ||||||||||||||||||||||||||||||||    
T  45511809 taaaaaaaaaagaagaagataaaagactaatgtgttacaaataaat 45511854  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 10 - 52
Target Start/End: Original strand, 45511670 - 45511712
Alignment:
Q  10 gacatcataattagagttgtgcttagtttaaacttggtgttaa 52  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45511670 gacatcataattagagttgtgcttagtttaaacttggtgttaa 45511712  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 5328080 - 5328037
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacc 697  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  5328080 aagataaaagactaaagtgttacaaataaataagataaatgacc 5328037  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 5328685 - 5328727
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgac 696  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  5328685 aagataaaagactaaagtgttacaagtaaataagataaatgac 5328727  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 653 - 701
Target Start/End: Original strand, 37623928 - 37623976
Alignment:
Q  653 gaagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  37623928 gaagataaaagactaatgtgttacaaataaataagataaaagaccttta 37623976  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 694
Target Start/End: Complemental strand, 37622867 - 37622827
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatg 694  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  37622867 aagataaaggactaatgtgttacaaataaataagataaatg 37622827  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 44520372 - 44520328
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||    
T  44520372 aagataaaagaccaaaatgttacaaataaataagataaatgacct 44520328  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 39069133 - 39069086
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||    
T  39069133 aagataaaggactaatgtgttacaaataaataagataaatgaccttta 39069086  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 39070194 - 39070241
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  39070194 aagataaaggactaatgtgttacaaataaataaaataaaggacattta 39070241  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 654 - 696
Target Start/End: Complemental strand, 11690895 - 11690853
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgac 696  Q
    |||||||||||| ||| |||||||||||||||| |||||||||    
T  11690895 aagataaaagaccaatatgttacaaataaataagataaatgac 11690853  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Original strand, 42737352 - 42737396
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||    
T  42737352 aagataaaggactaaaatgttacaaataaataagataaatgacct 42737396  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 656 - 701
Target Start/End: Complemental strand, 518341 - 518296
Alignment:
Q  656 gataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||    
T  518341 gataaaggactaatgtgttacaaataaataagataaatgaccttta 518296  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 27478902 - 27478949
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||    
T  27478902 aagataaaggactaatgtgttacaaataaataagataaaggaccttta 27478949  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 654 - 696
Target Start/End: Original strand, 519631 - 519673
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgac 696  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  519631 aagataaaggactaatgtgttacaaataaataagataaatgac 519673  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 10454552 - 10454505
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||||||||||||||| ||||| ||| ||||    
T  10454552 aagataaaggactaatgtgttacaaataaataagataaaagacattta 10454505  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 24460563 - 24460610
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| || ||||||||||||||||||||| ||||| ||||||||    
T  24460563 aagataaaggattaatgtgttacaaataaataagataaaggaccttta 24460610  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 657 - 695
Target Start/End: Complemental strand, 27477886 - 27477848
Alignment:
Q  657 ataaaagactaatgtgttacaaataaataaaataaatga 695  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  27477886 ataaaggactaatgtgttacaaataaataagataaatga 27477848  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Original strand, 7575455 - 7575499
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||| |||||| ||||||||||||||||| ||||| |||||    
T  7575455 aagataaaggactaaagtgttacaaataaataagataaaagacct 7575499  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 657 - 701
Target Start/End: Original strand, 20606110 - 20606154
Alignment:
Q  657 ataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    ||||| |||||||||||||||||||||||| ||||| ||| ||||    
T  20606110 ataaaggactaatgtgttacaaataaataagataaaggacattta 20606154  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 657 - 701
Target Start/End: Original strand, 21178443 - 21178487
Alignment:
Q  657 ataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    ||||| |||||||||||||||||||||||| ||||| ||| ||||    
T  21178443 ataaaggactaatgtgttacaaataaataagataaaggacattta 21178487  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 54410584 - 54410631
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||||    
T  54410584 aagataaaggactaatgtgttacaaataaataagataaatgacattta 54410631  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Original strand, 55136397 - 55136444
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| ||||||||||||| |||||||||| ||||| ||||||||    
T  55136397 aagataaaggactaatgtgttataaataaataagataaaggaccttta 55136444  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 654 - 698
Target Start/End: Original strand, 13861754 - 13861798
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||||||| || ||||||||||||||||||||||| |||||    
T  13861754 aagataaaagaccaaagtgttacaaataaataaaataaaggacct 13861798  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 701
Target Start/End: Complemental strand, 47649580 - 47649533
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgaccttta 701  Q
    |||||||| |||||||||||| ||||||||||||||||| ||| ||||    
T  47649580 aagataaaggactaatgtgttgcaaataaataaaataaaggacattta 47649533  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 31547705 - 31547661
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||||||| || ||||||||||||||||| ||||| |||||    
T  31547705 aagataaaagaccaaagtgttacaaataaataagataaaggacct 31547661  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Original strand, 37272550 - 37272594
Alignment:
Q  654 aagataaaagactaatgtgttacaaataaataaaataaatgacct 698  Q
    |||||||| ||| || ||||||||||||||||| |||||||||||    
T  37272550 aagataaaggaccaaagtgttacaaataaataagataaatgacct 37272594  T

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