View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4935-Insertion-2 (Length: 328)
Name: NF4935-Insertion-2
Description: NF4935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4935-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 96 - 328
Target Start/End: Complemental strand, 5479072 - 5478853
Alignment:
| Q |
96 |
ttctggattttatgattggaagctgggtaaaaacttcgaaggttgtgttaaaatgtttaatttatttaagattataatctacattaatatttggaatgtt |
195 |
Q |
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| T |
5479072 |
ttctggattttatgatcggaagctggataaaaacttccaaggttgtgttaaaatgtttaatttatttaagaatataatctacattaatatttggaatgtt |
5478973 |
T |
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| Q |
196 |
tattttttagttttgatgaaaaaagggctaactaaagacaaactaaaagcctcaaggacaactaacaaaggaagcatttacccttaaaatattacaagga |
295 |
Q |
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| T |
5478972 |
tattttttagttttcatgaaaaaagggctaactaaagacaaactaaaagcctcaaggacaactaacaaaggaagc-------------atattacaagga |
5478886 |
T |
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| Q |
296 |
cgcagaaactaaaatgtttcatttaaggtttca |
328 |
Q |
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| T |
5478885 |
cgcggaaactaaaatgtttcatttaaggtttca |
5478853 |
T |
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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 11677283 - 11677369
Alignment:
| Q |
8 |
cccttcaaagacgaaacaccaatattctctctcgtcaatggcaaaagcttcagagaaagtttgttgttgaatctgtcaaccatgtatgt |
96 |
Q |
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| T |
11677283 |
cccttcaaagacaaaacatcaatattctccc--gtcaatggcagaagcattagagaaagtttgttgttgaatcagtcaaccatgtatgt |
11677369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 253
Target Start/End: Complemental strand, 8406920 - 8406799
Alignment:
| Q |
138 |
ttgtgttaaaatgtttaatttatttaagattataatctacattaatatttggaatgtttattttttagttttgatg-aaaaaagggc-------taacta |
229 |
Q |
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| T |
8406920 |
ttgtgttaaaatgtttcatttattaaagaatataat-aacattaatttttggaatattta-tttttggtttggttgaaaaaaagggctatgcaataacta |
8406823 |
T |
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| Q |
230 |
aagacaaactaaaagcctcaagga |
253 |
Q |
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| T |
8406822 |
aagacaaactaaaagcctctagga |
8406799 |
T |
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