View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4935_high_7 (Length: 322)
Name: NF4935_high_7
Description: NF4935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4935_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 8323876 - 8324187
Alignment:
| Q |
1 |
gcaataccaattgcaagaccttcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcctccacaggttgattgtaatctattattg |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
8323876 |
gcaataccaattgcaagaccttcatctttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcttccactggttgattgtaatctattattg |
8323975 |
T |
|
| Q |
101 |
gaacaagctccatggttgagtcagaaggtgaaaaatcaccataatcatgaattgtttttgtggtttcagcttcaagcaaaatggcaccttttgcattgag |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8323976 |
gaacaagctccatggttgaatcagaaggtgaaaaatcaccataatcatgaattgtttttgtggtttcagcttcaagcaaaatagcaccttttgcattgag |
8324075 |
T |
|
| Q |
201 |
attcaattctattctaccaccttctttgtaacaataacgaccagctacaggatagtagtgaactaggattttgctgagtgaattctttagggtttctatg |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8324076 |
attcaactctattctaccaccttctttgtaacaataacgaccagctacaggatagtagtaaactaggattttgctgagtgaattctttagggtttctatg |
8324175 |
T |
|
| Q |
301 |
gctttttctgtg |
312 |
Q |
| |
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||||| |||||| |
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| T |
8324176 |
gctttatctgtg |
8324187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 53 - 300
Target Start/End: Original strand, 18317779 - 18318026
Alignment:
| Q |
53 |
ccacaaacaatggaatatcctccacaggttgattgtaatctattattggaacaagctccatggttgagtcagaaggtgaaaaatcaccataatcatgaat |
152 |
Q |
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| T |
18317779 |
ccacaaacaatggaatttcttcaatgggttgattataatcaacttttggaataagctctttggtggagtcagaaggtgaaaagtcaccataatcatgaat |
18317878 |
T |
|
| Q |
153 |
tgtttttgtggtttcagcttcaagcaaaatggcaccttttgcattgagattcaattctattctaccaccttctttgtaacaataacgaccagctacagga |
252 |
Q |
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||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |
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| T |
18317879 |
actttttgtggtttcagcttctattaaaatagctccttttgcattgagattcaattctattctaccaccttttctgtaacaatatcgaccagctacagga |
18317978 |
T |
|
| Q |
253 |
tagtagtgaactaggattttgctgagtgaattctttagggtttctatg |
300 |
Q |
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||||| ||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
18317979 |
tagtaatgaactaggattttgctgagtgagttctttaaggtttctatg |
18318026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 18272936 - 18272637
Alignment:
| Q |
1 |
gcaataccaattgcaagaccttcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcctccacaggttgattgtaatctattattg |
100 |
Q |
| |
|
||||| |||||||||| | ||||| |||||| ||||||||||||||||||| ||||||||||| || || || | |||| |||||||| | | ||| |
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| T |
18272936 |
gcaattccaattgcaaagctttcatcattgtttcgaaatcttgtgagttgaacaacaaacaatggcatttcttcaattggtttgttgtaatcaacttttg |
18272837 |
T |
|
| Q |
101 |
gaacaagctccatggttgagtcagaaggtgaaaaatcaccataatcatgaattgtttttgtggtttcagcttcaagcaaaatggcaccttttgcattgag |
200 |
Q |
| |
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||| |||||| |||| ||||||||||||| ||| ||||||||||||||||| |||||| | |||||||||| | |||||| || |||||||||||||| |
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| T |
18272836 |
gaataagctctttggtggagtcagaaggtgcaaagtcaccataatcatgaatactttttgagctttcagcttctatcaaaatagctccttttgcattgag |
18272737 |
T |
|
| Q |
201 |
attcaattctattctaccaccttctttgtaacaataacgaccagctacaggatagtagtgaactaggattttgctgagtgaattctttagggtttctatg |
300 |
Q |
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|||||||| ||||||||| |||| | ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
18272736 |
attcaattatattctaccgccttttgtgtaagaatatcgaccagctacaggatagtagtgaactaggattttgctgagtgagttctttaaggtttctatg |
18272637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 19996088 - 19996359
Alignment:
| Q |
1 |
gcaataccaattgcaagaccttcatgtttgttttgaaatcttgtgagttgaaccacaaacaatggaatatcctccacaggttgattgtaatctattattg |
100 |
Q |
| |
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||||||| |||||||||| ||||| ||||||||| ||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||| ||| |
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| T |
19996088 |
gcaatactaattgcaagatgttcatctttgttttggaattttgtgagttgaaccagaaacaatggaatatcttccacaggttgactgtaatcaatttttg |
19996187 |
T |
|
| Q |
101 |
gaacaagctccatggttgagtcagaaggtgaaaaatcaccataatcatgaattgtttttgtggtttcagcttcaagcaaaatggcaccttttgcattgag |
200 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |
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| T |
19996188 |
gaacaagctccatggtggagtcagaaggtgaaaagtcaccataatcatgaattgtttttgtggtttcaacttcaagcaaaattgcaccttttgcattgcg |
19996287 |
T |
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| Q |
201 |
attcaattctattctaccaccttctttgtaacaataacgaccagctacaggatagtagtgaactaggatttt |
272 |
Q |
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||||| |||| ||| ||||||| | ||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
19996288 |
attcagttctcttcgaccacctcttgtgtaacaataatgaccagctaatggatagtagtgaactaggatttt |
19996359 |
T |
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