View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936-Insertion-1 (Length: 960)
Name: NF4936-Insertion-1
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 734; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 734; E-Value: 0
Query Start/End: Original strand, 8 - 960
Target Start/End: Complemental strand, 50538347 - 50537376
Alignment:
| Q |
8 |
gttggtggacctgttcttggaaaccagaaggatcagacatgatcccaaggttagcagcacgcaatagaaccggggataggtgggtgtgttggccttcata |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
50538347 |
gttggtggacctgttcttggaaaccagaaggatcagacatgatcccaaggttagcagcacgcaatagaaccggggataggtggatgtgatggccttcata |
50538248 |
T |
|
| Q |
108 |
gctggttagcacgatcgaagagtctgcagccgaacgctctatacgcttcttcacctcacagctcccagcggtgcaacggtaatagctcctattttgcatc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
50538247 |
gctggttagcacgatcgaagagtctgcagccgaacgctctatacgcttcttcacctcacagttcccggcggtgcaacggtaatagctcctattttgcatc |
50538148 |
T |
|
| Q |
208 |
acacaagatnnnnnnnnn--tgtaagccaaattggagagtatgtgtttatgctatagttacaaatatatagtctaaatggaataaaaaattaagtttgat |
305 |
Q |
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| T |
50538147 |
acacaagataaaaaaaaaaatgtaagccaaattggagagtatgtgt--atgctatagttacaaatatatagtctaaatggaataaaaaattaagtttgat |
50538050 |
T |
|
| Q |
306 |
ttttagacaaagccttcaaatcttagtgcaagggaatcaaatgcatctacttttgcactcagatctaaaggctatgcaatagtatcttgatttgatggta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50538049 |
ttttagacaaagccttcaaatcttagtgcaagggaatcaaatgcatctacttttgcactcagatctaaaggctatgcaatagtatcttgatttgatggta |
50537950 |
T |
|
| Q |
406 |
catgtatgtat------------atacctgggaaatgggctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaa |
493 |
Q |
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| T |
50537949 |
catgtatgtatgtatgtatgtatatacctgggaaatgggctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaa |
50537850 |
T |
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| Q |
494 |
tatcactctttgtcttgaaagtaactcttgctggtcgtagcttcttgttc---ttcttcttctttggcttcaacctataacaccagtttcagctttattc |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50537849 |
catcactctttgtcttgaaagtaactcttgctggtcgtagcttcttgttcttgttcttcttctttggcttcaacctataacaccagtttcagctttattc |
50537750 |
T |
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| Q |
591 |
agtaaatcaaatcaatattttaatgnnnnnnnctattacttttcttattgtcaaactagcatacattaaacaaaagtaaataaa-----------acatg |
679 |
Q |
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| T |
50537749 |
agtaaatcaaatcaatattttaatgtttttttctattacttttcttattgtcaaactagcatacattaaacaaaagtaaacaaaacggcaagaacacatg |
50537650 |
T |
|
| Q |
680 |
gaaatgacactgacaacagtgaataacccggaaagcccgctcaaagtaattgaatacacagacacacacaaaaaacatacatcaccttcaacttcctcgt |
779 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50537649 |
gaaatgacactgacaacagtgaataacccggaaagcccgctcaaagtaattgaatacacagacacacacaaaaaacatacatcatcttcaacttcctcgt |
50537550 |
T |
|
| Q |
780 |
cttcatttggaactgctgtttcttttttctctttttagtcaattacaatttttaattaatnnnnnnnnnnnnnnnnntgatattttaatcaactcactgt |
879 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
50537549 |
cttcatttggaactgctgtttcttttttctctttttagtcaattacaatttttaattaat-------aaaataaaaatgatattttaatcaactcactgt |
50537457 |
T |
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| Q |
880 |
ttcttcatctgatcttgatcattttgattctctacaagtctgattccatgatcttcatccttctcttctgcttcatctcct |
960 |
Q |
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| T |
50537456 |
ttcttcatctgatcttgatcattttgattctctacaagtctgattccatgatcttcatccttctcttctgcttcatctcct |
50537376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 12869119 - 12869215
Alignment:
| Q |
418 |
tacctgggaaatgggctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaatatcactctttgtcttgaaag |
514 |
Q |
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||||||||||| || |||||||| || | |||||||||||| || ||||||||||| |||||||| | |||||||| |||||||||||| |||||| |
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| T |
12869119 |
tacctgggaaaaggactgtttttcacagctttttggccatatttacgccacctatagccatcatctaggtgatcaacttcactctttgtcatgaaag |
12869215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 433 - 514
Target Start/End: Complemental strand, 12557739 - 12557658
Alignment:
| Q |
433 |
ctgtttttgactggtttttggccatacttgcgccacctataaccatcatccaagtgatcaatatcactctttgtcttgaaag |
514 |
Q |
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|||||||| || | |||||||||||| || |||||||||||||||||||| | |||||||| |||||||||||| |||||| |
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| T |
12557739 |
ctgtttttcacagctttttggccatatttacgccacctataaccatcatctaggtgatcaacttcactctttgtcatgaaag |
12557658 |
T |
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