View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4936-Insertion-3 (Length: 676)

Name: NF4936-Insertion-3
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4936-Insertion-3
NF4936-Insertion-3
[»] chr2 (2 HSPs)
chr2 (8-411)||(33867833-33868236)
chr2 (140-181)||(26795559-26795600)
[»] chr4 (1 HSPs)
chr4 (466-539)||(43405216-43405290)
[»] chr7 (2 HSPs)
chr7 (116-172)||(41329883-41329939)
chr7 (464-519)||(2016830-2016886)
[»] chr5 (2 HSPs)
chr5 (139-186)||(37243663-37243710)
chr5 (484-520)||(31943608-31943644)
[»] chr3 (1 HSPs)
chr3 (476-541)||(35052565-35052630)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 8 - 411
Target Start/End: Original strand, 33867833 - 33868236
Alignment:
Q  8 ggatcgtcatgcttaactcgttnnnnnnntgaagcggggcaagcacagggtggcgggcccgccaactcgtctacttactattttaaannnnnnngttcaa 107  Q
    |||||||||||||||||| |||       |||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||        ||||||    
T  33867833 ggatcgtcatgcttaacttgttaaaaaaatgaagcggggtaagcacggggtggtgggcccgccaactcgtctacttactattttaattttttttgttcaa 33867932  T
Q  108 ctgatcaaataaaatttaaagggatgcgatccaataatccatcataa-ctcaaatttgtctcataagtttgttttcaccaaataattatttgatgtcaat 206  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33867933 ctgatcaaataaaatttaaagggaagcgacccaataatccatcataaactcaaatttgtctcataagtttgttttcaccaaataattatttgatgtcaat 33868032  T
Q  207 tatatatannnnnnnggatgaaaacaatattattttttatgacaacaaaattgtcnnnnnnntcattaaaaactttttctttgtttgatgggtcggcccg 306  Q
    |||||||        |||| ||||||||||| |||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  33868033 tatatatttttttttggataaaaacaatatt-ttttttataacaacaaaattgtcaaaaaaatcattaaaaactttttctttgtttgatgggtcggcccg 33868131  T
Q  307 ccaaccctcagcccaccactaagcggggaggggttggatttttaactcggccacctaaattgacatggcccgtctcatcctgtttttggcggacttacgc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||||||| |||||||||||||||||||    
T  33868132 ccaaccctcagcccaccactaagcggggaggggttggatttttaacccgaccgcctaaattgacatgacccgtctcatcccgtttttggcggacttacgc 33868231  T
Q  407 aaggc 411  Q
    |||||    
T  33868232 aaggc 33868236  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 26795559 - 26795600
Alignment:
Q  140 aataatccatcataactcaaatttgtctcataagtttgtttt 181  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  26795559 aataacccatcataacttaaatttgtctcataagtttgtttt 26795600  T

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Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 466 - 539
Target Start/End: Original strand, 43405216 - 43405290
Alignment:
Q  466 atttattgatc-aatgatgaaaaagacacttatgcatgatgcaagatcattttactcgtatatgttaggcaaaac 539  Q
    ||||||||||| |||| |||||| || |||| |||||||||||||||||||||||| || |||||||| ||||||    
T  43405216 atttattgatctaatggtgaaaaggatacttgtgcatgatgcaagatcattttacttgtgtatgttagacaaaac 43405290  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 41329939 - 41329883
Alignment:
Q  116 ataaaatttaaagggatgcgatccaataatccatcataactcaaatttgtctcataa 172  Q
    |||||||||||| ||  |||| ||||||||| |||||||||||||||||||||||||    
T  41329939 ataaaatttaaatgggagcgacccaataatctatcataactcaaatttgtctcataa 41329883  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 464 - 519
Target Start/End: Complemental strand, 2016886 - 2016830
Alignment:
Q  464 tgatttattgat-caatgatgaaaaagacacttatgcatgatgcaagatcattttac 519  Q
    |||||||||||| |||||||||||| |||  ||||||||| ||||||| ||||||||    
T  2016886 tgatttattgattcaatgatgaaaaggacctttatgcatggtgcaagaacattttac 2016830  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 37243663 - 37243710
Alignment:
Q  139 caataatccatcataactcaaatttgtctcataagtttgttttcacca 186  Q
    ||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  37243663 caataatccatcataactcaaatttgtctcataaacttgtttttacca 37243710  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 31943644 - 31943608
Alignment:
Q  484 aaaaagacacttatgcatgatgcaagatcattttact 520  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  31943644 aaaaagacatttatacatgatgcaagatcattttact 31943608  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 541
Target Start/End: Original strand, 35052565 - 35052630
Alignment:
Q  476 caatgatgaaaaagacacttatgcatgatgcaagatcattttactcgtatatgttaggcaaaactt 541  Q
    ||||| || ||||||||||| |||||||||||| |||||||| || ||  ||||||| ||||||||    
T  35052565 caatggtggaaaagacacttgtgcatgatgcaatatcattttgcttgtgcatgttagacaaaactt 35052630  T

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