View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936-Insertion-4 (Length: 530)
Name: NF4936-Insertion-4
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936-Insertion-4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 245 - 530
Target Start/End: Complemental strand, 25976230 - 25975950
Alignment:
| Q |
245 |
tatgacatcaaacaaatactataccaccaagttagagaattgtgtatcattaatattttgtttagacnnnnnnngtggtattaattattaatgagtactt |
344 |
Q |
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| T |
25976230 |
tatgacatcaaacaaatactataccaccaagttagagaattgtgtatcattaatattttgtttagacaaaaaaa-tggtatta----ttaatgaatactt |
25976136 |
T |
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| Q |
345 |
acaaacatagattaaagaataacaattctttttaagagtcatcatcaatcaaattcacttatgtggattaggaaataacgaaagaaaataacataagaac |
444 |
Q |
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| T |
25976135 |
acaaacatagattaaaaaataacaattctttttaagagtcatcatcaatcaaattcacttatgtggattaggaaataacgaaagaaaataacataagaac |
25976036 |
T |
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| Q |
445 |
gacctacggagataccaaaagtcgtaaactatattctttttcactaaaaacaaatgaatctctttataacctctaaaagtcacaaa |
530 |
Q |
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| T |
25976035 |
gacctacggagataccaaaagtcgtaaactatattctttttcactaaaaacaaatgaatctctttataacctctaaaagtcacaaa |
25975950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 25976383 - 25976278
Alignment:
| Q |
73 |
cttgttgtcattataatttcgtccaaacacccaccacaatttttgacatacacttaattctttcaaattctgtttatatttaattaattcatgtttattt |
172 |
Q |
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| T |
25976383 |
cttgttgtcagtataatttcgtccaaacacccaccacaatttttgacattcacttaattctttcaaattctgtttatatttaattaatccatgtttattt |
25976284 |
T |
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| Q |
173 |
aataat |
178 |
Q |
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| T |
25976283 |
tataat |
25976278 |
T |
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