View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4936-Insertion-5 (Length: 198)

Name: NF4936-Insertion-5
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4936-Insertion-5
NF4936-Insertion-5
[»] chr6 (7 HSPs)
chr6 (7-198)||(1899593-1899784)
chr6 (17-195)||(1905059-1905237)
chr6 (17-195)||(1909292-1909470)
chr6 (30-195)||(1914604-1914773)
chr6 (20-195)||(1888513-1888689)
chr6 (44-195)||(1893684-1893835)
chr6 (44-189)||(1881516-1881661)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 1899784 - 1899593
Alignment:
Q  7 atctagttcatatttgaatctcgatttgataaccatattttaaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1899784 atctagttcatatttgaatctcgatttgataaccatattttaaacagttccatttgttttattgtcaaaagtgtgagttctagagctttgcaaaagaggt 1899685  T
Q  107 gcattctcattagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaaggccaatcga 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1899684 gcattctcattagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatatagcataaaggccaatcga 1899593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 1905237 - 1905059
Alignment:
Q  17 tatttgaatctcgatttgataaccatattttaaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcat 116  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  1905237 tatttgaatctcaatttgataatgatattttaaacatttccatttgttttattttcaaaagtttgagttctagagctttgcaaaagaggtgcattctcat 1905138  T
Q  117 tagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaaggccaat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1905137 tagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaagaccaat 1905059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 1909470 - 1909292
Alignment:
Q  17 tatttgaatctcgatttgataaccatattttaaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcat 116  Q
    |||||||||||| |||||||||  ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||    
T  1909470 tatttgaatctcaatttgataatgatattttaaacatttccatttgttttattttcaaaagtttgagttctagagctttgcaaaagaggtgcattctcat 1909371  T
Q  117 tagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaaggccaat 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1909370 tagatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaagaccaat 1909292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 30 - 195
Target Start/End: Complemental strand, 1914773 - 1914604
Alignment:
Q  30 atttgataaccatatttt-aaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcattagatggtgact 128  Q
    ||||||||||||| |||| |||||||||||| | |||| |  |||||||| |  | ||||  ||||||||||||||||||||||||| ||||||||||||    
T  1914773 atttgataaccatgtttttaaacatttccatctattttcttttcaaaagtttctgctctattgctttgcaaaagaggtgcattctcagtagatggtgact 1914674  T
Q  129 ccaaactacca---acatcttcctctatctcttctgtagctttgccccataatacagcataaaggccaat 195  Q
     ||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1914673 gcaagctaccaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaagaccaat 1914604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 1888689 - 1888513
Alignment:
Q  20 ttgaatctcgatttgataaccatattt-taaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcatta 118  Q
    |||||||| |||| ||||||||||||| |||||| ||||||||||||| |  |||||||| | | ||||| |||||||||| ||||||||||| ||  ||    
T  1888689 ttgaatctagattcgataaccatatttctaaacaattccatttgttttgttttcaaaagtttcaattctacagctttgcaatagaggtgcattatctgta 1888590  T
Q  119 gatggtgactccaaactaccaacatcttcctctatctcttctgtagctttgccccataatacagcataaaggccaat 195  Q
    |||||||||||  | ||||||||||||||||||||||||||| | | ||||||||| | ||||||||||||||||||    
T  1888589 gatggtgactctgagctaccaacatcttcctctatctcttctcttgatttgccccacattacagcataaaggccaat 1888513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 1893835 - 1893684
Alignment:
Q  44 ttttaaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcattagatggtgactccaaactaccaacat 143  Q
    ||||||| ||||||||||||||| |  ||||| || | ||||||| | ||||| |||||||||||||||||  ||||||||||||| |  ||||||||||    
T  1893835 ttttaaatatttccatttgttttcttttcaaatgtttcagttctataactttgtaaaagaggtgcattctctatagatggtgactctaggctaccaacat 1893736  T
Q  144 cttcctctatctcttctgtagctttgccccataatacagcataaaggccaat 195  Q
    |||||||||||| |||||| |||||||||||||||||||||||||| |||||    
T  1893735 cttcctctatcttttctgttgctttgccccataatacagcataaagaccaat 1893684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 44 - 189
Target Start/End: Complemental strand, 1881661 - 1881516
Alignment:
Q  44 ttttaaacatttccatttgttttatcgtcaaaagtgtgagttctagagctttgcaaaagaggtgcattctcattagatggtgactccaaactaccaacat 143  Q
    ||||||||||||||||||||||| |  |||||||| | | ||||| |||||||||| ||||||||||| ||  |||||||||||||  | ||||||||||    
T  1881661 ttttaaacatttccatttgttttgttttcaaaagtttcaattctacagctttgcaatagaggtgcattatctgtagatggtgactctgagctaccaacat 1881562  T
Q  144 cttcctctatctcttctgtagctttgccccataatacagcataaag 189  Q
    ||||||||||||||||| | | ||||||||| | ||||||||||||    
T  1881561 cttcctctatctcttctcttgatttgccccacattacagcataaag 1881516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University