View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4936_high_12 (Length: 303)

Name: NF4936_high_12
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4936_high_12
NF4936_high_12
[»] chr4 (23 HSPs)
chr4 (22-223)||(42750888-42751085)
chr4 (26-223)||(42760355-42760547)
chr4 (233-295)||(24392670-24392732)
chr4 (77-208)||(42741588-42741714)
chr4 (233-295)||(33530688-33530750)
chr4 (233-295)||(2624840-2624902)
chr4 (233-295)||(7745112-7745174)
chr4 (233-295)||(10442789-10442851)
chr4 (233-295)||(21802322-21802384)
chr4 (233-295)||(22199264-22199326)
chr4 (233-295)||(24128242-24128304)
chr4 (233-295)||(31078819-31078881)
chr4 (233-295)||(47290069-47290131)
chr4 (233-295)||(49387888-49387950)
chr4 (234-295)||(36073354-36073415)
chr4 (233-293)||(36072950-36073010)
chr4 (233-295)||(44893429-44893491)
chr4 (233-295)||(50156578-50156640)
chr4 (233-293)||(4751449-4751509)
chr4 (236-295)||(42671675-42671734)
chr4 (233-295)||(53123033-53123096)
chr4 (233-295)||(23964465-23964527)
chr4 (233-295)||(46441847-46441909)
[»] chr5 (19 HSPs)
chr5 (42-223)||(23042773-23042948)
chr5 (233-295)||(17545685-17545747)
chr5 (233-295)||(22913054-22913116)
chr5 (233-295)||(2477639-2477701)
chr5 (233-295)||(4434007-4434069)
chr5 (233-295)||(4892205-4892267)
chr5 (233-295)||(11361131-11361193)
chr5 (233-295)||(25398241-25398303)
chr5 (233-295)||(33584329-33584391)
chr5 (233-295)||(6043511-6043573)
chr5 (234-295)||(8145379-8145440)
chr5 (242-295)||(10458409-10458462)
chr5 (233-293)||(3362781-3362841)
chr5 (233-293)||(38899728-38899788)
chr5 (233-295)||(37321793-37321856)
chr5 (233-295)||(3522006-3522068)
chr5 (233-295)||(12614733-12614795)
chr5 (233-295)||(14138671-14138733)
chr5 (233-293)||(12850804-12850864)
[»] chr7 (17 HSPs)
chr7 (233-295)||(15238385-15238447)
chr7 (233-295)||(37477080-37477142)
chr7 (231-294)||(36790467-36790530)
chr7 (233-295)||(4974735-4974797)
chr7 (233-295)||(15577850-15577912)
chr7 (233-295)||(18036981-18037043)
chr7 (233-295)||(42611814-42611876)
chr7 (233-295)||(45637715-45637777)
chr7 (233-293)||(24394975-24395035)
chr7 (233-295)||(3961982-3962044)
chr7 (233-295)||(15329276-15329338)
chr7 (233-295)||(25167850-25167912)
chr7 (233-295)||(34482838-34482900)
chr7 (233-295)||(35444561-35444623)
chr7 (233-295)||(48880927-48880989)
chr7 (234-295)||(29737143-29737204)
chr7 (250-295)||(40880792-40880837)
[»] chr6 (16 HSPs)
chr6 (236-295)||(11548588-11548647)
chr6 (233-295)||(9752245-9752306)
chr6 (233-295)||(6127278-6127340)
chr6 (233-295)||(23291084-23291146)
chr6 (233-295)||(33695327-33695389)
chr6 (233-295)||(33696699-33696761)
chr6 (230-295)||(8515725-8515790)
chr6 (233-295)||(17705465-17705527)
chr6 (233-295)||(18365573-18365635)
chr6 (233-295)||(18370837-18370899)
chr6 (233-294)||(18889698-18889758)
chr6 (233-295)||(17176021-17176083)
chr6 (233-295)||(25986933-25986995)
chr6 (233-295)||(28675151-28675213)
chr6 (241-295)||(32702216-32702270)
chr6 (234-294)||(29693652-29693712)
[»] chr8 (25 HSPs)
chr8 (233-295)||(31347782-31347844)
chr8 (240-295)||(7021988-7022043)
chr8 (233-294)||(15187563-15187624)
chr8 (233-295)||(7017865-7017927)
chr8 (233-295)||(17841850-17841912)
chr8 (233-295)||(20091801-20091863)
chr8 (233-295)||(32064748-32064810)
chr8 (233-295)||(32393861-32393923)
chr8 (233-295)||(34665385-34665447)
chr8 (233-295)||(35353044-35353106)
chr8 (233-295)||(37132658-37132720)
chr8 (233-295)||(40780129-40780191)
chr8 (233-295)||(1645965-1646027)
chr8 (233-295)||(14128867-14128929)
chr8 (233-295)||(24211553-24211615)
chr8 (233-295)||(27782117-27782179)
chr8 (233-295)||(42755042-42755104)
chr8 (234-295)||(3890413-3890474)
chr8 (234-295)||(37986055-37986116)
chr8 (238-295)||(38016979-38017036)
chr8 (231-295)||(8453835-8453899)
chr8 (233-295)||(6108233-6108295)
chr8 (233-295)||(26042116-26042178)
chr8 (233-295)||(39772801-39772863)
chr8 (233-295)||(41819778-41819840)
[»] chr2 (13 HSPs)
chr2 (233-295)||(21393688-21393750)
chr2 (233-295)||(21936084-21936146)
chr2 (233-295)||(43330915-43330977)
chr2 (233-295)||(10661890-10661952)
chr2 (233-295)||(23268062-23268124)
chr2 (233-295)||(35160760-35160822)
chr2 (233-294)||(13354849-13354910)
chr2 (233-295)||(9293576-9293638)
chr2 (233-295)||(14941366-14941428)
chr2 (233-295)||(33380210-33380272)
chr2 (226-295)||(31174834-31174903)
chr2 (233-295)||(7475508-7475570)
chr2 (242-295)||(22591494-22591547)
[»] chr3 (19 HSPs)
chr3 (233-295)||(3456067-3456129)
chr3 (233-295)||(8362045-8362107)
chr3 (233-295)||(9797029-9797091)
chr3 (233-295)||(48160908-48160970)
chr3 (233-295)||(2754720-2754782)
chr3 (233-295)||(3574527-3574589)
chr3 (233-295)||(34482910-34482972)
chr3 (233-295)||(37217053-37217115)
chr3 (233-294)||(11347271-11347332)
chr3 (233-295)||(3137414-3137476)
chr3 (233-295)||(6041887-6041949)
chr3 (233-295)||(8320584-8320646)
chr3 (242-294)||(47738117-47738169)
chr3 (236-291)||(41224239-41224294)
chr3 (233-295)||(19650900-19650962)
chr3 (233-295)||(24343550-24343612)
chr3 (233-295)||(30385014-30385076)
chr3 (233-295)||(33113796-33113858)
chr3 (233-295)||(37522056-37522118)
[»] chr1 (15 HSPs)
chr1 (233-295)||(19015407-19015469)
chr1 (233-295)||(36966708-36966770)
chr1 (233-295)||(37821834-37821896)
chr1 (233-293)||(32000269-32000329)
chr1 (233-295)||(9910293-9910355)
chr1 (233-295)||(40214991-40215053)
chr1 (233-295)||(44094701-44094763)
chr1 (234-295)||(16045798-16045859)
chr1 (231-295)||(3559618-3559682)
chr1 (233-295)||(18404445-18404507)
chr1 (233-295)||(25463679-25463741)
chr1 (233-295)||(41876442-41876504)
chr1 (233-295)||(6883490-6883552)
chr1 (233-295)||(40273705-40273767)
chr1 (233-295)||(27523255-27523319)
[»] scaffold0471 (1 HSPs)
scaffold0471 (233-295)||(12845-12907)
[»] scaffold0204 (1 HSPs)
scaffold0204 (233-295)||(4399-4461)
[»] scaffold0665 (1 HSPs)
scaffold0665 (228-295)||(3066-3133)
[»] scaffold0178 (1 HSPs)
scaffold0178 (233-295)||(11624-11686)
[»] scaffold0096 (1 HSPs)
scaffold0096 (233-295)||(41014-41076)
[»] scaffold0085 (1 HSPs)
scaffold0085 (233-295)||(47853-47915)
[»] scaffold0228 (3 HSPs)
scaffold0228 (241-295)||(8413-8467)
scaffold0228 (241-295)||(15995-16049)
scaffold0228 (241-295)||(25947-26001)
[»] scaffold0041 (1 HSPs)
scaffold0041 (250-295)||(85446-85491)


Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 42750888 - 42751085
Alignment:
Q  22 gaaaaggaataaattgttagagagtggttgaacattattttaattcatattgttatatcttattcatatttgattccattcatcataaattaccattcaa 121  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42750888 gaaaaggaataaattgttagagattggttgaacattattttaattcatattgttttatcttattcatatttgattccattcatcataaattaccattcaa 42750987  T
Q  122 acaacattgatatattcgatcacttcgcaaactttgaagaacttgtaaacaacacaacatgtccctttattgaaaacgggagaaaaatattgacactgtc 221  Q
    |||||||||| ||||    ||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42750988 acaacattgaaatat----tcacttcacaaactttaaagaacttgtacacaacaaaacatgtccctttattgaaaacgggagaaaaatattgacactgtc 42751083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 42760355 - 42760547
Alignment:
Q  26 aggaataaattgtt-agagagtggttgaacattattttaattcatattgttatatcttattcatatttgattccattcatcataaattaccattcaaaca 124  Q
    |||||||||||||| | ||||||||| |||||||| ||| ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  42760355 aggaataaattgttgacagagtggttaaacattatcttatttcatgttgttttatcttattcat--ttgattccattcatcataaattaccattcaaaca 42760452  T
Q  125 acattgatatattcgatcacttcgcaaactttgaagaacttgtaaacaacacaacatgtccctttattgaaaacgggagaaaaatattgacactgtctt 223  Q
    ||||||| ||||||    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42760453 acattgaaatattc----acttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaacgggagaaaaatattgacactgtctt 42760547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 24392670 - 24392732
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  24392670 caatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 24392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 208
Target Start/End: Original strand, 42741588 - 42741714
Alignment:
Q  77 tatcttattcatatttgattccattcatcataaattaccattcaaacaacattgatatattcgatcacttcgcaaactttgaagaacttgtaaacaacac 176  Q
    ||||||||||||  |||||| || ||| |||||||||||||| |||||||||||||||||    ||||||| ||| |||||||||||||||| | || ||    
T  42741588 tatcttattcat--ttgatttcactcaccataaattaccattaaaacaacattgatatat----tcacttcacaacctttgaagaacttgtacataatac 42741681  T
Q  177 aacatgtccctttattgaaaac-gggagaaaaa 208  Q
    ||||||||   ||||||||| | ||||||||||    
T  42741682 aacatgtcttgttattgaaaccagggagaaaaa 42741714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 33530750 - 33530688
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||||||||||| |||||||| ||||||||||||||    
T  33530750 caatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaataatc 33530688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 2624840 - 2624902
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  2624840 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaataatc 2624902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 7745174 - 7745112
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  7745174 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 7745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 10442851 - 10442789
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  10442851 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 10442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 21802384 - 21802322
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  21802384 caatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 21802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 22199264 - 22199326
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  22199264 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 22199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 24128242 - 24128304
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  24128242 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 24128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 31078881 - 31078819
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  31078881 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 31078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 47290069 - 47290131
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  47290069 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 47290131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 49387950 - 49387888
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  49387950 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 49387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 36073354 - 36073415
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  36073354 aatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 36073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 36072950 - 36073010
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||    
T  36072950 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataa 36073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 44893429 - 44893491
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  44893429 caatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaataatc 44893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 50156640 - 50156578
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| |||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  50156640 caatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 50156578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 4751449 - 4751509
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| |  |||||||| ||||||||||||    
T  4751449 caatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 4751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 42671675 - 42671734
Alignment:
Q  236 tgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| ||| | ||| |||| ||||||| |||||||| ||||||||||||||    
T  42671675 tgctatatatcaataaagattttatcaaaaaaaatttaagaatgacatggcagaataatc 42671734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 53123033 - 53123096
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaa-gaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| ||||| || |||||||| ||||||||||||||    
T  53123033 caatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacatggcagaataatc 53123096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 23964527 - 23964465
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  23964527 caatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 23964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 46441847 - 46441909
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||| |||||| |||||||    
T  46441847 caatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacatggcaaaataatc 46441909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 42 - 223
Target Start/End: Complemental strand, 23042948 - 23042773
Alignment:
Q  42 agagtggttgaacattattttaattcatattgttatatcttattcatatttgattccattcatcataaattaccattcaaacaacattgatatattcgat 141  Q
    ||||||||| |||||||||||| ||||||||||| ||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||       
T  23042948 agagtggttaaacattattttatttcatattgttttatcttattcat--ttgattcaattcatcataaattaccattcaaacaacattgatatattc--- 23042854  T
Q  142 cacttcgcaaactttgaagaacttgtaaacaacacaacatgtccctttattgaaaacgggagaaaaatattgacactgtctt 223  Q
     ||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23042853 -acttcacaaactttgaagaacttgtacacaacacaacatgtccctttattgaaaatgggagaaaaatattgacactgtctt 23042773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 17545747 - 17545685
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  17545747 caatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatc 17545685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 22913116 - 22913054
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||||||||||| |||||||| ||||||||||||||    
T  22913116 caatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacatggcagaataatc 22913054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 2477639 - 2477701
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  2477639 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 4434069 - 4434007
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||||||||||||||||||    
T  4434069 caatgctatatatcaagaaagatttttttaagaaaatttcaagaatgatatggcagaataatc 4434007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 4892205 - 4892267
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  4892205 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4892267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 11361193 - 11361131
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  11361193 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 11361131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 25398241 - 25398303
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  25398241 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 25398303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 33584391 - 33584329
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  33584391 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 33584329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 6043573 - 6043511
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||| |||||||||    
T  6043573 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaataatc 6043511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 8145379 - 8145440
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||| |||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  8145379 aatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 10458409 - 10458462
Alignment:
Q  242 atatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| ||| |||||||||||| |||||||| |||||| |||||||    
T  10458409 atatcaagaaaaattttatcaagaaaaattcaagaatgacatggcaaaataatc 10458462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 3362781 - 3362841
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| |  |||||||| ||||||||||||    
T  3362781 caatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 3362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 38899788 - 38899728
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| |  |||||||| ||||||||||||    
T  38899788 caatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 38899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37321856 - 37321793
Alignment:
Q  233 caatgctatatatc-aagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||| |||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  37321856 caatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 3522068 - 3522006
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| ||||||||| || || ||||| ||||||||||||||    
T  3522068 caatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaataatc 3522006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 12614795 - 12614733
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||||||| ||| |||||||| ||| || |||||||    
T  12614795 caatgctatatatcaagaaatattttatcaagaaagattcaagaatgacatgacataataatc 12614733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 14138671 - 14138733
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| ||||||||| || |||||| | ||||||||||||||    
T  14138671 caatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaataatc 14138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 12850804 - 12850864
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| |  || ||||| ||||||||||||    
T  12850804 caatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaataa 12850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 15238385 - 15238447
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  15238385 caatgctatatatcaagaaaaaatttctcaagaaaaattcaagaatgacatggcagaataatc 15238447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37477142 - 37477080
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  37477142 caatgctatatatcaagaaagattttctcaagaaaaatttaagaatgacatggcagaataatc 37477080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 294
Target Start/End: Complemental strand, 36790530 - 36790467
Alignment:
Q  231 aacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    ||||||||||||||||||||||   ||| |||||||||||| |||||||| |||||||||||||    
T  36790530 aacaatgctatatatcaagaaagtttttatcaagaaaaatttaagaatgacatggcagaataat 36790467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 4974797 - 4974735
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  4974797 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 4974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 15577912 - 15577850
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  15577912 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 15577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 18036981 - 18037043
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| |||||||||||| |||||||| ||||||||||||||    
T  18036981 caatgatatatatcaagaaagattttttcaagaaaaatttaagaatgacatggcagaataatc 18037043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 42611814 - 42611876
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  42611814 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42611876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 45637715 - 45637777
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  45637715 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 45637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 293
Target Start/End: Original strand, 24394975 - 24395035
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||    
T  24394975 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataa 24395035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 3961982 - 3962044
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  3961982 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 3962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 15329276 - 15329338
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  15329276 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 15329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 25167912 - 25167850
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  25167912 caatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 25167850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 34482838 - 34482900
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  34482838 caatgctatatatcaagaaagattttattaagaaaattttaagaatgacatggcagaataatc 34482900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 35444561 - 35444623
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| |||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  35444561 caatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 35444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 48880989 - 48880927
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  48880989 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 48880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 29737143 - 29737204
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||| | ||| | ||||||| || |||||||| |||| |||||||||    
T  29737143 aatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggtagaataatc 29737204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 40880837 - 40880792
Alignment:
Q  250 aaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||| |||||||||| | |||||||| ||||||||||||||    
T  40880837 aaaaaatttatcaagaaaaactcaagaatgacatggcagaataatc 40880792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 11548647 - 11548588
Alignment:
Q  236 tgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  11548647 tgctatatatcaagaaaaattttctcaagaaaaattcaagaatgacatggcagaataatc 11548588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 9752306 - 9752245
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||    
T  9752306 caatgttatatatcaagaaaaaatta-tcaagaaaaattcaagaatgatatggcagaataatc 9752245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 6127278 - 6127340
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  6127278 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 6127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 23291146 - 23291084
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  23291146 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 23291084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 33695389 - 33695327
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  33695389 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33695327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 33696699 - 33696761
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  33696699 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 295
Target Start/End: Complemental strand, 8515790 - 8515725
Alignment:
Q  230 caacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||||||| | ||| |||||| | ||| |||||||| ||||||||||||||    
T  8515790 caacaatgctatatatcaagaaagattttatcaagacagatttaagaatgacatggcagaataatc 8515725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 17705527 - 17705465
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  17705527 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 17705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 18365635 - 18365573
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  18365635 caatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18365573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 18370899 - 18370837
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  18370899 caatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18370837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 18889758 - 18889698
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||||||||||||    
T  18889758 caatgctatatatcaagaaaga-tttatcaagaaaatttcaagaatgacatggcagaataat 18889698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 17176083 - 17176021
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||| ||||||||||    
T  17176083 caatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatc 17176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 25986933 - 25986995
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||| |||||| |||||||    
T  25986933 caatgctatatatcaagaaagattttattaagaaaatttcaagaatgacatggcaaaataatc 25986995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 28675151 - 28675213
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| | ||||||||    
T  28675151 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgtcggaataatc 28675213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 32702216 - 32702270
Alignment:
Q  241 tatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||| | ||| ||| ||||| || |||||||||||||||||||||||    
T  32702216 tatatcaagaaagattttttcatgaaaatttcaagaatgatatggcagaataatc 32702270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 294
Target Start/End: Complemental strand, 29693712 - 29693652
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    ||||||| ||||||||||  | ||| |||||||| ||| |||||||| |||||||||||||    
T  29693712 aatgctagatatcaagaatgattttatcaagaaagatttaagaatgacatggcagaataat 29693652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 31347844 - 31347782
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  31347844 caatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacatggcagaataatc 31347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 7021988 - 7022043
Alignment:
Q  240 atatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatgatatggcagaataatc 7022043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 15187563 - 15187624
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    |||||||||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||    
T  15187563 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 15187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 7017927 - 7017865
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||| |||| | ||||| |||||||||| |||||||| ||||||||||||||    
T  7017927 caatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacatggcagaataatc 7017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 17841912 - 17841850
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  17841912 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 17841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 20091863 - 20091801
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  20091863 caatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 20091801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 32064748 - 32064810
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  32064748 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 32064810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 32393861 - 32393923
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  32393861 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 32393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 34665385 - 34665447
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  34665385 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 34665447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 35353044 - 35353106
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  35353044 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 35353106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37132720 - 37132658
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||| ||| | ||| |||||||||||| |||||||| ||||||||||||||    
T  37132720 caatgctatatatcaaaaaatattttatcaagaaaaatttaagaatgacatggcagaataatc 37132658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 40780191 - 40780129
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  40780191 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 40780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 1646027 - 1645965
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || ||||| || ||||||||||||||    
T  1646027 caatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaataatc 1645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 14128867 - 14128929
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  14128867 caatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 14128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 24211615 - 24211553
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||  ||||||||||||||    
T  24211615 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaataatc 24211553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 27782179 - 27782117
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||||||| ||| || ||||| ||||||||||||||    
T  27782179 caatgctatatatcaagaaatattttatcaagaaagattcaataatgacatggcagaataatc 27782117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 42755104 - 42755042
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  42755104 caatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42755042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 3890413 - 3890474
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||| ||||||||||  | ||| |||||||| ||| |||||||||||||||||||||||    
T  3890413 aatgctagatatcaagaatgattttatcaagaaagattcaagaatgatatggcagaataatc 3890474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 37986116 - 37986055
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  37986116 aatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 37986055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 38016979 - 38017036
Alignment:
Q  238 ctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  38016979 ctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 38017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 8453835 - 8453899
Alignment:
Q  231 aacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||||| | ||| ||||||||| || |||||||| ||| || |||||||    
T  8453835 aacaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgacaaaataatc 8453899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 6108295 - 6108233
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  6108295 caatgttatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 6108233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 26042178 - 26042116
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| |||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  26042178 caatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 26042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 39772863 - 39772801
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  39772863 caatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaataatc 39772801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 41819840 - 41819778
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| |||||||   || |||||||||||||||||||||||    
T  41819840 caatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatc 41819778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 21393750 - 21393688
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||| |||| |||||||||    
T  21393750 caatgctatatatcaagaaaaattttctcaagaaaaatttaagaatgacatggtagaataatc 21393688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 21936084 - 21936146
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  21936084 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataatc 21936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 43330915 - 43330977
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | |||||||| ||||||| |||||||| ||||||||||||||    
T  43330915 caatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacatggcagaataatc 43330977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 10661890 - 10661952
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  10661890 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 10661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 23268124 - 23268062
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  23268124 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 23268062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 35160760 - 35160822
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  35160760 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 35160822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 13354849 - 13354910
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    ||||| |||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||    
T  13354849 caatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 13354910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 9293638 - 9293576
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||  || |||||||| ||||||||||||||    
T  9293638 caatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaataatc 9293576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 14941428 - 14941366
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | |||||| ||| |||||||| ||||||||||||||    
T  14941428 caatgctatatatcaagaaagattttattaagaaagattcaagaatgacatggcagaataatc 14941366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 33380210 - 33380272
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||| ||||||||    
T  33380210 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaataatc 33380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 31174903 - 31174834
Alignment:
Q  226 aaaacaacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||| ||||||| |||||||||||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  31174903 aaaagaacaatgttatatatcaagaaagattttattaagaaaatttcaagaatgacatggcagaataatc 31174834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 7475570 - 7475508
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||  |||||||||    
T  7475570 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatgatagaataatc 7475508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 22591494 - 22591547
Alignment:
Q  242 atatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||| | ||| | || ||||||| |||||||||||||||||||||||    
T  22591494 atatcaagaaagattttattaaaaaaaattcaagaatgatatggcagaataatc 22591547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 3456067 - 3456129
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  3456067 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 3456129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 8362107 - 8362045
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||||||  | |||||||||||| |||||||| ||||||||||||||    
T  8362107 caatgctatatatcaagaaaaaaaatttcaagaaaaattcaagaatgacatggcagaataatc 8362045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 9797091 - 9797029
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  9797091 caatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 9797029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 48160908 - 48160970
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  48160908 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 48160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 2754720 - 2754782
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  2754720 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 3574589 - 3574527
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  3574589 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 3574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 34482972 - 34482910
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || ||||||||||||| |||||||||    
T  34482972 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaataatc 34482910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37217115 - 37217053
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  37217115 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37217053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 11347271 - 11347332
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||||||||||||    
T  11347271 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataat 11347332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 3137476 - 3137414
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||||| |||||||    
T  3137476 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcaaaataatc 3137414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 6041887 - 6041949
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  6041887 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 6041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 8320646 - 8320584
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| |||||||||||||| | ||| ||||||||| || ||||||||||||||| |||||||    
T  8320646 caatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggcaaaataatc 8320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 47738117 - 47738169
Alignment:
Q  242 atatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataat 294  Q
    ||||||||||| | ||| |||||||| ||| ||||||||||||||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatgatatggcagaataat 47738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 291
Target Start/End: Original strand, 41224239 - 41224294
Alignment:
Q  236 tgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaat 291  Q
    |||||||||| |||||| | |||||||||||||||| |||||||| |||| |||||    
T  41224239 tgctatatattaagaaagattttctcaagaaaaattcaagaatgacatggtagaat 41224294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 19650962 - 19650900
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||| ||||||| |||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  19650962 caatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 19650900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 24343550 - 24343612
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| |||||| | ||| |||||||||||| || | | ||||||||||||||||    
T  24343550 caatgctatatattaagaaagattttatcaagaaaaattcaaaattaatatggcagaataatc 24343612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 30385014 - 30385076
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||| |||||||||| | ||| ||||||||| || || ||||| ||||||||||||||    
T  30385014 caatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaataatc 30385076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 33113796 - 33113858
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||| | ||||||||||||||    
T  33113796 caatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaataatc 33113858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 37522056 - 37522118
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||| ||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  37522056 caatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatc 37522118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 19015407 - 19015469
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  19015407 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 19015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 36966770 - 36966708
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  36966770 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 36966708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 37821896 - 37821834
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  37821896 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 37821834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 32000329 - 32000269
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataa 293  Q
    |||||||||||||||||||| | |||||||||||||||| |||||||| ||| ||||||||    
T  32000329 caatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatgacagaataa 32000269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 9910355 - 9910293
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  9910355 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 9910293  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 40214991 - 40215053
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  40214991 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 40215053  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 44094701 - 44094763
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  44094701 caatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 44094763  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 16045859 - 16045798
Alignment:
Q  234 aatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  16045859 aatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16045798  T

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Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 3559618 - 3559682
Alignment:
Q  231 aacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  3559618 aacaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 3559682  T

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Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 18404445 - 18404507
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| |||| |||||||||    
T  18404445 caatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaataatc 18404507  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 25463679 - 25463741
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  25463679 caatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaataatc 25463741  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 41876504 - 41876442
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  41876504 caatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaataatc 41876442  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 6883490 - 6883552
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||| |||||| | ||| | ||||||| || |||||||| ||||||||||||||    
T  6883490 caatgctatatattaagaaagatttttttaagaaaatttcaagaatgacatggcagaataatc 6883552  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 40273705 - 40273767
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||| ||||||||||| | ||| |||||||||||| |||||||| ||| || |||||||    
T  40273705 caatgctagatatcaagaaagattttttcaagaaaaattcaagaatgacatgtcaaaataatc 40273767  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 27523319 - 27523255
Alignment:
Q  233 caatgctatata--tcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||||||  ||||||| || ||| |||||||||||| |||||||| ||| ||||||||||    
T  27523319 caatgctatatacatcaagaacaattttatcaagaaaaatttaagaatgacatgacagaataatc 27523255  T

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Target: scaffold0471 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 12845 - 12907
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  12845 caatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 12907  T

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Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 4399 - 4461
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  4399 caatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4461  T

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Target: scaffold0665 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Original strand, 3066 - 3133
Alignment:
Q  228 aacaacaatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||| |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  3066 aacagcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 3133  T

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Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 11624 - 11686
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| ||||||||| || |||||||| ||| ||||||||||    
T  11624 caatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 11686  T

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Target: scaffold0096 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 41014 - 41076
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||||||||||| | ||| |||| |||| || |||||||| ||||||||||||||    
T  41014 caatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 41076  T

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Target: scaffold0085 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Original strand, 47853 - 47915
Alignment:
Q  233 caatgctatatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||| |||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  47853 caatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 47915  T

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Target: scaffold0228 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 8413 - 8467
Alignment:
Q  241 tatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8467  T

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Target: scaffold0228; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 15995 - 16049
Alignment:
Q  241 tatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16049  T

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Target: scaffold0228; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 295
Target Start/End: Original strand, 25947 - 26001
Alignment:
Q  241 tatatcaagaaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    |||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 26001  T

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Target: scaffold0041 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 85446 - 85491
Alignment:
Q  250 aaaaaatttctcaagaaaaattaaagaatgatatggcagaataatc 295  Q
    ||||||||| |||||||||| | |||||||| ||||||||||||||    
T  85446 aaaaaatttatcaagaaaaactcaagaatgacatggcagaataatc 85491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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