View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_15 (Length: 300)
Name: NF4936_high_15
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 49060963 - 49060677
Alignment:
| Q |
13 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060963 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaa |
49060864 |
T |
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| Q |
113 |
aactacttctgacagtggcagtggactaagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagag |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060863 |
aactacttctgacagtggcagtggactaagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagac |
49060764 |
T |
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| Q |
213 |
gaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggtgctgcac |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49060763 |
gaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggagctgcac |
49060677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 47274489 - 47274398
Alignment:
| Q |
198 |
gatcaggatgaagaggaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgt |
289 |
Q |
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|||||||||||||| |||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||||| |
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| T |
47274489 |
gatcaggatgaagacaaagatgaggataaagagaatggtcatgacaatgaggacccatgagctcagaagaagccccctgttgtttggtctgt |
47274398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 47275162 - 47275104
Alignment:
| Q |
13 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaag |
71 |
Q |
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| T |
47275162 |
aacctgtgagattacaggagctaaagaccatttggcagcatgtaattcggaagaagaag |
47275104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 47280847 - 47280787
Alignment:
| Q |
13 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtc |
73 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||| |||| |
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| T |
47280847 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaataaggagtc |
47280787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 47275103 - 47275044
Alignment:
| Q |
240 |
gacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtggtgctgcac |
299 |
Q |
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||||||||||||| |||||||||||||||| | | | |||||||||||||| ||||||| |
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| T |
47275103 |
gacaatgaggacctatcagctcagaagaagtcccagtctgtttggtctgtggagctgcac |
47275044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 48870087 - 48870039
Alignment:
| Q |
238 |
atgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtc |
286 |
Q |
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|||||||||| || ||| |||| |||||||||||||| ||||||||||| |
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| T |
48870087 |
atgacaatgatgatccaacagcacagaagaagcctcgagttgtttggtc |
48870039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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