View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_2 (Length: 542)
Name: NF4936_high_2
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_2 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 4e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1219124 - 1218876
Alignment:
| Q |
1 |
gttggttgtttcaatgtgttcacttcatctcagctctgggagtgggaagtatttacaattacttcgcaatttgttggggaagagacatataaccgatcaa |
100 |
Q |
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| T |
1219124 |
gttggttgtttcaaggtgttcacttcatctcagctctggtagtgggaagtatttacaactgcttggcaatttgttggggaagagacatataaccaatcaa |
1219025 |
T |
|
| Q |
101 |
ctgccattggaattttgcaatgttcttcaaaaaggaaagaaacacttgggtttggaagtcattgccgaggcatttaaagtgattggcaatcccttgataa |
200 |
Q |
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| T |
1219024 |
ctgcaattggaattttgcaatgttcttcaagaaggaaagaaacacttgggtttggaagtcttcgccaaggcatttaaagtgattggcaatcccttgataa |
1218925 |
T |
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| Q |
201 |
ttgccaagcttcagaacaattctacagaaattgtgtgttcagatgctat |
249 |
Q |
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| T |
1218924 |
ttgcgaaacttcggaacaattctagaaaaattatgtgtttagatgctat |
1218876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 4 - 428
Target Start/End: Complemental strand, 34601502 - 34601088
Alignment:
| Q |
4 |
ggttgtttcaatgtgttcacttcatctcagctctgggagtgggaagtatttacaattacttcgcaatttgttggggaagagacatataaccgatcaactg |
103 |
Q |
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| T |
34601502 |
ggttgtttcgatgtgcttgcttcacctcagtactgggagtcggaagtatttagaattacttcgctgtttgttgaaaaatagctatatgaccactcaaatg |
34601403 |
T |
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| Q |
104 |
ccattggaattttgcaatgttcttcaaaaaggaaagaaacacttgggtttggaagtcattgccgaggcatttaaagtgattggcaatcccttgataattg |
203 |
Q |
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| T |
34601402 |
ccattggaattttgcaatgttcttcaaaaaggaaataaacacatgggtttg----------ctgaggcatttaaagtaattggaaaccccttggtaatcg |
34601313 |
T |
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| Q |
204 |
ccaagcttcagaacaattctacagaaattgtgtgttcagatgctatctttgtggatttaacgatatgccaaaaaagagagctcatattacaaacattgtt |
303 |
Q |
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| T |
34601312 |
tcaggcttcaaaacagttcttccaaaatcatgtgttcagatgctgtgtttgtggatttagcgacgtgcaaaaaaagagaactcgtgttagaaatgttatt |
34601213 |
T |
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| Q |
304 |
tcctagtacagttgactatgtggctgaggaaaccatagcagaagcctctgattcaaaatctaaggagtttccttcaaaccttcaggataaaagccttgct |
403 |
Q |
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| T |
34601212 |
tcctagtatagttgacagtgtgggtggggaaaccacagcagaagcctctgaatcaaaatctaaggagtttccttcaaaccttcaaaataaaagctctgct |
34601113 |
T |
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| Q |
404 |
tctgtttcagatcaggcatcagatg |
428 |
Q |
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| T |
34601112 |
tctgtttcagatcaggcatcagatg |
34601088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 539
Target Start/End: Complemental strand, 34601074 - 34601004
Alignment:
| Q |
469 |
cttcttgaattggttggaaaatttcgagtcttcaactgatgtatcatggcttaataatgtttcacctgatt |
539 |
Q |
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| T |
34601074 |
cttctggaattggttggaaaatttcaagtctgcagcggatgtattatgtcgtaatagtgtttcacctgatt |
34601004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 4 - 362
Target Start/End: Original strand, 28404194 - 28404552
Alignment:
| Q |
4 |
ggttgtttcaatgtgttcacttcatctcagctctgggagtgggaagtatttacaattacttcgcaatttgttggggaagagacatataaccgatcaactg |
103 |
Q |
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| T |
28404194 |
ggttgtttcaatgtgcttgcttcacctcagcactgggagtagggagtatttagaaatacttcgcagtttgttgaaaaatagctatatgaccactcaattg |
28404293 |
T |
|
| Q |
104 |
ccattggaattttgcaatgttcttcaaaaaggaaagaaacacttgggtttggaagtcattgccgaggcatttaaagtgattggcaatcccttgataattg |
203 |
Q |
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| T |
28404294 |
ccattggaatttcgtaatgttcttcaaaaaggaaagaaacgcatgggtttccaagtcattgctaaggcatttaaagtaattggaaaccccttggtaattg |
28404393 |
T |
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| Q |
204 |
ccaagcttcagaacaattctacagaaattgtgtgttcagatgctatctttgtggatttaacgatatgccaaaaaagagagctcatattacaaacattgtt |
303 |
Q |
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||||||||| |||| |||| | ||||| |||||||||||||| | || ||||||||||||| ||| |||||||||||||| |||| ||||||| || |
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| T |
28404394 |
tcaagcttcaaaacagttcttccgaaatcatgtgttcagatgctgtgttcgtggatttaacgacgtgcaaaaaaagagagctcgtatttgaaacattatt |
28404493 |
T |
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| Q |
304 |
tcctagtacagttgactatgtggctgaggaaaccatagcagaagcctctgattcaaaat |
362 |
Q |
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|||||||| ||||||| || || || |||||||| | || |||||||||| ||||||| |
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| T |
28404494 |
tcctagtatagttgacagtgcgggtggggaaaccaaaacaaaagcctctgaatcaaaat |
28404552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 307
Target Start/End: Original strand, 24617 - 24837
Alignment:
| Q |
87 |
atataaccgatcaactgccattggaattttgcaatgttcttcaaaaaggaaagaaacacttgggtttggaagtcattgccgaggcatttaaagtgattgg |
186 |
Q |
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||||||||| |||| |||| |||||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||| ||||| |
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| T |
24617 |
atataaccgctcaattgcctttggaatttttcaatgttcttcggaaaggaaataaacacatgggtttggaagtcattgcagaggcatttaaagtaattgg |
24716 |
T |
|
| Q |
187 |
caatcccttgataattgccaagcttcagaacaattctacagaaattgtgtgttcagatgctatctttgtggatttaacgatatgccaaaaaagagagctc |
286 |
Q |
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| T |
24717 |
aaaccccttggtcattgtcaggcttcagaacagttcttccaaaatcgtgtgttcagatgctgtgtttgtggatttagggacgtgccaaacacgagagctc |
24816 |
T |
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| Q |
287 |
atattacaaacattgtttcct |
307 |
Q |
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|||||||||| ||| |||||| |
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| T |
24817 |
atattacaaatattatttcct |
24837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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