View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_3 (Length: 437)
Name: NF4936_high_3
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 42751061 - 42750629
Alignment:
| Q |
1 |
cgttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttatgatgaa |
100 |
Q |
| |
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||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
42751061 |
cgttttcaataaagggacatgttttgttgtgtacaagttctttaaagtttgtgaagtga----atatttcaatgttgtttgaatggtaatttatgatgaa |
42750966 |
T |
|
| Q |
101 |
tggaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctctaacaatttattccttttcnnnnnnnnnnnn-ttcctataa |
199 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
42750965 |
tggaatcaaatatgaataagataaaacaatatgaattaaaataatgttcaaccaatctctaacaatttattccttttcaaaaaaaaaaaaattcctataa |
42750866 |
T |
|
| Q |
200 |
cgtattaacattagaaaaatattgtgatttgtcaaaaaacaaacacatgagaaattaataccgcaagattatacggaaaagatattaataatatgtttta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
42750865 |
cgtattaacattagaaaaatattgtgatttgtcaaaaaacaaacacattagaaattaataccgcaagattatacggaaaagagattaataatatgtttta |
42750766 |
T |
|
| Q |
300 |
ataacattgaannnnnnngtataaagactatgttggtataagtatttagcaacatgttaatagaaacaatataaaataattagacactaaggaattgaag |
399 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42750765 |
ataacattgaatttttttgtataaagactatgttggtataagtatttagcaacatgttaatagaaacaatataaaataattagacacaaaggaattgaag |
42750666 |
T |
|
| Q |
400 |
aaaaatactttccaaccatgattctgacagtcattac |
436 |
Q |
| |
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||||| ||||||||||||||||||| ||||||||||| |
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| T |
42750665 |
aaaaaaactttccaaccatgattctaacagtcattac |
42750629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 42760523 - 42760108
Alignment:
| Q |
1 |
cgttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttatgatgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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|
| T |
42760523 |
cgttttcaataaagggacatgttgtgttgtgtacaagttcttcaaagtttgtgaagt----gaatatttcaatgttgtttgaatggtaatttatgatgaa |
42760428 |
T |
|
| Q |
101 |
tggaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctct-aacaatttattccttttcnnnnnnnnnnnnttcctataa |
199 |
Q |
| |
|
||||||||| |||||||||||| ||||| ||||| ||| |||||||| ||||||||| | ||||||||||| ||||||| |
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| T |
42760427 |
tggaatcaa--atgaataagataaaacaacatgaaataagataatgtttaaccactctgtcaacaatttatt---------------------cctataa |
42760351 |
T |
|
| Q |
200 |
cgtattaacattagaaaaatattgtgatttgt-----caaaaaacaaacacatgagaaattaataccgcaagattatacggaaaagatatt-aataatat |
293 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||| |||| ||| ||||| ||||| || |||||||| || ||||| ||| |||||||| |
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|
| T |
42760350 |
cgtattaacattagaaaaat-ttgtgatttataaaagaaaaaaaaaaacgcattagaaa--aatactgctagattatatgggaaagagattaaataatat |
42760254 |
T |
|
| Q |
294 |
gttttaataacattgaannnnnnngtataaagactatgttggtataagtatttagcaacatgttaatagaaacaatataaaataattagacac---taag |
390 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| | | |||||||||||||||||||||||||||| ||| ||||||||||| || |||| |
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|
| T |
42760253 |
gttttaataacattgaatttttttgtataaagactatgttgctgttagtatttagcaacatgttaatagaaacagtatcaaataattagagacacgtaag |
42760154 |
T |
|
| Q |
391 |
gaattgaagaaaaatactttccaaccatgattctgacagtcattac |
436 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||| |
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|
| T |
42760153 |
gaattgaagaaaaaaactttccaaccatgattctgacagttattac |
42760108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 42741689 - 42741588
Alignment:
| Q |
16 |
gacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttatgatgaatggaatcaaatatga |
115 |
Q |
| |
|
|||||||||| || | |||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||| ||| || |||||| |||| |
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|
| T |
42741689 |
gacatgttgtattatgtacaagttcttcaaaggttgtgaagtga----atatatcaatgttgttttaatggtaatttatggtgagtgaaatcaa--atga |
42741596 |
T |
|
| Q |
116 |
ataagata |
123 |
Q |
| |
|
|||||||| |
|
|
| T |
42741595 |
ataagata |
42741588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 3 - 436
Target Start/End: Original strand, 23042799 - 23043204
Alignment:
| Q |
3 |
ttttcaataaagggacatgttgtgttgtttacaagttcttcaaagtttgtgaagtgatcgaatatatcaatgttgtttgaatggtaatttatgatgaatg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23042799 |
ttttcaataaagggacatgttgtgttgtgtacaagttcttcaaagtttgtgaagt----gaatatatcaatgttgtttgaatggtaatttatgatgaatt |
23042894 |
T |
|
| Q |
103 |
gaatcaaatatgaataagatataacaatatgaattaaaataatgttcaaccactctctaacaatttattccttttcnnnnnnnnnnnnttcctataacgt |
202 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||| | ||||||||| |||||||||| |
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|
| T |
23042895 |
gaatcaa--atgaataagataaaacaatatgaaataaaataatgtttaaccactctat-tcaatttatt---------------------cctataacgt |
23042970 |
T |
|
| Q |
203 |
attaacattagaaaaatattgtgatttgtcaaaaaa---caaacacatgagaaattaataccgcaagatt-atacggaaaagatattaataatatgtttt |
298 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||| | || ||||| ||| |||||||| |||||||| ||||||| |
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|
| T |
23042971 |
ataaacattagaaaaatattgtgatttgtcaaaaaaaataaaacacattagaaa--aatgctgctagattaatatggaaaagagattaataaaatgtttt |
23043068 |
T |
|
| Q |
299 |
aataacattgaannnnnnngtataaagactatgttggtataagtatttagcaacatgttaatagaaacaatataaaataattagacactaaggaattgaa |
398 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
23043069 |
aataacattgaatttttttgtataaagactatgttggtataagtatttagcaacatgttaatagaaaca--ctaaaataattagacactaaggaattgaa |
23043166 |
T |
|
| Q |
399 |
gaaaaatactttccaaccatgattctgacagtcattac |
436 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
23043167 |
gaaaaaaactttccaaccatgattctgacagttattac |
23043204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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