View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_5 (Length: 339)
Name: NF4936_high_5
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 75 - 324
Target Start/End: Complemental strand, 15528567 - 15528318
Alignment:
| Q |
75 |
aaaattatgaagaaaatgattaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacac |
174 |
Q |
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| T |
15528567 |
aaaaatatgaagaaaatgattaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacac |
15528468 |
T |
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| Q |
175 |
tggaatgaacatagcttcttcactgtatgtgtttgcatgtccagtttgactgtttacaccagatgaataattgatggttacatttttgttctgaggtagt |
274 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15528467 |
tggaatgaacatagcttcttcaccgtatgtgtttgcatgtccagtttgactgtttacaccagatgaataattgatggttacatttttgttctgaggtaga |
15528368 |
T |
|
| Q |
275 |
ggaaaattcttgattctattgtctttggacaaaccaaaacaagaataagt |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
15528367 |
ggaaaattcttgattctattgtctttggacaaaccaaaacaagagtaagt |
15528318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 15546088 - 15545764
Alignment:
| Q |
1 |
ataattaccaacagaaatataattatgtctcatattacaatatt-tctgtagg-atggcagggaaaaacttgtacaaaaattatgaagaaaatg------ |
92 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| | || || || ||| ||||||||||||||||||||||||| | |||||||| |
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| T |
15546088 |
ataattaccaacacaaatataattatgtctcatattacaatactctcagttgggatgacagggaaaaacttgtacaaaaattacg-agaaaatgattaaa |
15545990 |
T |
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| Q |
93 |
attaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacactggaatgaacatagcttc |
192 |
Q |
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| T |
15545989 |
attaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattcgaagacaacggttgattcaatactggaatgaacatggcttc |
15545890 |
T |
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| Q |
193 |
ttcactgtatgtgtttgcatgtccagtt---tgactgtttacaccagatgaataattgatggttacatttttgttctgaggtagtggaaaattcttgatt |
289 |
Q |
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|||||||||||||||| | || |||| | | | || || ||||| ||||||||||||||| | |||||||||||| | ||||||||||||||| |
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| T |
15545889 |
ttcactgtatgtgtttatttctctagttatcatattttctatacaagatgtataattgatggttacctctttgttctgagggataggaaaattcttgatt |
15545790 |
T |
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| Q |
290 |
ctattgtctttggacaaaccaaaaca |
315 |
Q |
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|||| ||| ||| ||||||||||||| |
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| T |
15545789 |
ctatggtccttgcacaaaccaaaaca |
15545764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 15522496 - 15522295
Alignment:
| Q |
1 |
ataattaccaacagaaatataattatgtctcatattacaatatt-tctgtagg-atggcagggaaaaacttgtacaaaaattatgaagaaaatg------ |
92 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| | || || || ||| ||||||||||||||||||||||||| | |||||||| |
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| T |
15522496 |
ataattaccaacacaaatataattatgtctcatattacaatactctcagttgggatgacagggaaaaacttgtacaaaaattacg-agaaaatgattaaa |
15522398 |
T |
|
| Q |
93 |
attaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacactggaatgaacatagcttc |
192 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
15522397 |
attaaataaatacatacccttgatatttcccctcccttcttataacatagtagcgattagaagacaatggttgattcaatactggaatgaacatagcttc |
15522298 |
T |
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| Q |
193 |
ttc |
195 |
Q |
| |
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||| |
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|
| T |
15522297 |
ttc |
15522295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 15518111 - 15518002
Alignment:
| Q |
88 |
aaatgattaaataaatacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaacactggaatgaacata |
187 |
Q |
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|||| ||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||| |
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| T |
15518111 |
aaattattaaataa-tacatacccttgattctttcccttccttcttataacgtagtagcgattagaagacaatggttgatttaatactggaatgaacata |
15518013 |
T |
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| Q |
188 |
gcttcttcact |
198 |
Q |
| |
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||||||||||| |
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| T |
15518012 |
gcttcttcact |
15518002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 15522268 - 15522187
Alignment:
| Q |
243 |
aattgatggttacatttttgttctgaggtagtggaaaattcttgattctattgtctttggacaaaccaaaacaagaataagt |
324 |
Q |
| |
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|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
15522268 |
aattgatggttaaatttttgttctgaggtaaaggaaaattcttgattctattgtcttttgacaaaccaaaacaagagtaagt |
15522187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 15550682 - 15550614
Alignment:
| Q |
103 |
tacatacccttgatacttccccttccttcttataacatagtagcgattcgaagacaatggttgattcaa |
171 |
Q |
| |
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|||||||||||||| |||||||||||||| ||| ||||| || || ||||||||||||||||||||||| |
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| T |
15550682 |
tacatacccttgattcttccccttccttcgtatgacataataacggttcgaagacaatggttgattcaa |
15550614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 324
Target Start/End: Complemental strand, 15517975 - 15517897
Alignment:
| Q |
246 |
tgatggttacatttttgttctgaggtagtggaaaattcttgattctattgtctttggacaaaccaaaacaagaataagt |
324 |
Q |
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| T |
15517975 |
tgatggttaaatttttgttttgaggtaaaggaaaattcttgattctagtatccttgcacaaaccaaaacaagagtaagt |
15517897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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