View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_7 (Length: 337)
Name: NF4936_high_7
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33867837 - 33867762
Alignment:
| Q |
1 |
gatccaactagagggaaatagttcaaaattttggcttagtcggtcaaaaataacgggctaaacgaaccgatctacg |
76 |
Q |
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| T |
33867837 |
gatccaactagagggaaatagttcaaaactttggcttagtcggtcaaaaataacgggctaaacgaaccgatctacg |
33867762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 142
Target Start/End: Complemental strand, 33867138 - 33867065
Alignment:
| Q |
69 |
gatctacgcgtgttggatccgtttgcaaacccctaatcatatctcatttaatctaatgatgaaatctagttatc |
142 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33867138 |
gatctacgcgagttggatccgtttgcaaacccctaatcatatctcatttaatttaatgatgaaatctagttatc |
33867065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 18061121 - 18061075
Alignment:
| Q |
278 |
aagacgaaccttctgaaaatagtttataagacgaagacgaaccttct |
324 |
Q |
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| T |
18061121 |
aagacgaaccttctgaaaatagtttggaagacgaagacgaaccttct |
18061075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 18061154 - 18061108
Alignment:
| Q |
278 |
aagacgaaccttctgaaaatagtttataagacgaagacgaaccttct |
324 |
Q |
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| T |
18061154 |
aagacgaaccttctgaaaatagtttggaagacgaagacgaaccttct |
18061108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 18061248 - 18061202
Alignment:
| Q |
278 |
aagacgaaccttctgaaaatagtttataagacgaagacgaaccttct |
324 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18061248 |
aagacgaaccttctgaaaatagtttggaagacgaagacgaaccttct |
18061202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 18061187 - 18061141
Alignment:
| Q |
278 |
aagacgaaccttctgaaaatagtttataagacgaagacgaaccttct |
324 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
18061187 |
aagacgaaccttctgaaaatggtttggaagacgaagacgaaccttct |
18061141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 324
Target Start/End: Complemental strand, 18061308 - 18061262
Alignment:
| Q |
278 |
aagacgaaccttctgaaaatagtttataagacgaagacgaaccttct |
324 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
18061308 |
aagacgaaccttctgaaaaaggtttggaagacgaagacgaaccttct |
18061262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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