View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4936_high_9 (Length: 328)
Name: NF4936_high_9
Description: NF4936
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4936_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 19592934 - 19593136
Alignment:
| Q |
23 |
gatgcgggtggtggtggatccgatgaagatgttggttgtttgtgagccatagtgactttcaatgtgatatgatttaaaatagcatatgtcacaatacact |
122 |
Q |
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| T |
19592934 |
gatgcgggtggtggtggatccgatgaagatgttggttgtttgtgagccatagtgactttcaatgtgatatgatttaaaatagcatatgtcacaatacact |
19593033 |
T |
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| Q |
123 |
tagaaaaatagaatcggttgaggaatgggtacaaatggcaattgatccacactattaggaagtgagacgaagcaagtgagagagtgctgctaagtcaaat |
222 |
Q |
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| T |
19593034 |
tagaaaaatagaatcggttgaggaatgggtacaaatggcaattgatccacactattaggaagtgagacgaagcaagtgagagagcgctgctaagttaaat |
19593133 |
T |
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| Q |
223 |
att |
225 |
Q |
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||| |
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| T |
19593134 |
att |
19593136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 299
Target Start/End: Complemental strand, 19595477 - 19595427
Alignment:
| Q |
249 |
ctcttataagtaaatttttaaatcttggcatagaatccaaacccatatttt |
299 |
Q |
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| T |
19595477 |
ctcttaaaaggaaatttttaaatctttacatagaatccaaacccatatttt |
19595427 |
T |
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