View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-1 (Length: 1000)
Name: NF4937-Insertion-1
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 580; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 7 - 610
Target Start/End: Original strand, 42214673 - 42215276
Alignment:
| Q |
7 |
aaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtgatgatgattttgattcaagcattgttttggacaaaga |
106 |
Q |
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| T |
42214673 |
aaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtgatgatgattttgattcaagcattgttttggacaaaga |
42214772 |
T |
|
| Q |
107 |
gtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggttttatgctggaggaatctctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214773 |
gtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggttttatgctggaggaatctctt |
42214872 |
T |
|
| Q |
207 |
tgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataacttaaaacct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214873 |
tgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaatgatgacataacttaaaacct |
42214972 |
T |
|
| Q |
307 |
aattaggcctctaattattatacatgatctgcctcttttttctggcttgagtaaatagtatacagtacatatttactgtaggctgtaattgaagaacatg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214973 |
aattaggcctctaattattatacatgatctgcctcttttttctggcttgagtaaatagtatacagtacatatttactgtaggctgtaattgaagaacatg |
42215072 |
T |
|
| Q |
407 |
tatgttagagcatggtggtatatataggttaatttaactcagcctttgtctatcatgggggaaatatttgtttgaatacaattacttttgtaataatgtt |
506 |
Q |
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| T |
42215073 |
tatgttagagcatggtggtatatataggttaatttaactcagcctttgtctatcatgggggaaatatttgtttgaatacaattacttttgtaataatctt |
42215172 |
T |
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| Q |
507 |
attggtgcgaattgtaaatgtctaatttctgttgaataatctgtttgatcaggttcaaatacaaaacctttttattaagagatctaggtcaagttctact |
606 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
42215173 |
attggttcgaattgtaaatgtctaatttctgttgaataatctgtttgaccagattcaaatacaaaacctttttattaagggatctgggtcaagttctact |
42215272 |
T |
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| Q |
607 |
caga |
610 |
Q |
| |
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|||| |
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| T |
42215273 |
caga |
42215276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 7 - 517
Target Start/End: Original strand, 42207846 - 42208377
Alignment:
| Q |
7 |
aaagacttgttttcgactctggatcaactgcatctcggataaagagggatgaacaaaaaggtgatgatgattttgattcaagcat--------------- |
91 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| || |
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| T |
42207846 |
aaagacttgttttcgactctagatcaaccgcatctcggataaagggggatgaacaaaaaggtgatgaggattttgattcaagaatggatattcctttgga |
42207945 |
T |
|
| Q |
92 |
-tgttttg-----gacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggt |
185 |
Q |
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| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42207946 |
atattttgatctggacaaagagtgtgcaattgagacattggtggggctcaaggaatttgatggacatgagggacttgattctgaatttattggtgatggt |
42208045 |
T |
|
| Q |
186 |
tttatgctggaggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208046 |
tttatgctggaggaatctctttgatcagtagatcacaaacacatacataggtagcttccaaaccatgtgtagagaaaacatgactgcaattacttgtgaa |
42208145 |
T |
|
| Q |
286 |
tgatgacataacttaaaacctaattaggcctctaattattatacatgatctgcctcttttttctggcttgagtaaatagtatacagtacatatttactgt |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208146 |
tgatgacataacttaaaacctaattaggcctctaattattatacatgatctgcctcttttttctggcttgagtaaatagtatacagtacatatttactgt |
42208245 |
T |
|
| Q |
386 |
aggctgtaattgaagaacatgtatgttagagcatggtggtatatataggttaatttaactcagcctttgtctatcatgggggaaatatttgtttgaatac |
485 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208246 |
aggctgtaattgaagaacatgtatgttagagcatggtggtatatataggttaatttaactcagcctttgtctatcatgggggaaatatttgtttgaatac |
42208345 |
T |
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| Q |
486 |
aattacttttgtaataatgttattggtgcgaa |
517 |
Q |
| |
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|||||||||||||||||| ||||||||||||| |
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| T |
42208346 |
aattacttttgtaataatcttattggtgcgaa |
42208377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 609 - 988
Target Start/End: Original strand, 42215181 - 42215565
Alignment:
| Q |
609 |
gaattgtaaatgtctaatttctgttgaataatatgtttgatcaggttcaaatacaaaacctttttattaagagatctaggtcaagttctactcagattaa |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| |||||||||||||||||| ||| |
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| T |
42215181 |
gaattgtaaatgtctaatttctgttgaataatctgtttgaccagattcaaatacaaaacctttttattaagggatctgggtcaagttctactcagactaa |
42215280 |
T |
|
| Q |
709 |
tgtaatgtggtgaatacaattacaacatttatcaccaatcgttttaggataaatttaaataattatccagccttatgtt-gaaattattttgatgttatc |
807 |
Q |
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|||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42215281 |
tgtaatgtggtgaatataattacaacatttaccaccaatcattttaggataaatttaaataattatccagccttatgttagaaattattttgatgttatc |
42215380 |
T |
|
| Q |
808 |
ctgcatattttaattttattgattgtgtctg-aaaattatttttgttcacatggtgttccaacataagtagttagctaactacttatgaatttaatccct |
906 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42215381 |
ctgcatattttaattttattgattgtgtctgaaaaattatttttgttcacatggtgttccaacataagtagttagctaactacttatgaatttaatccct |
42215480 |
T |
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| Q |
907 |
tccagcatattttctgtataatgattataat-ccta-tagctatagtatatgcccactactccactagcagttaa-taacctcgt |
988 |
Q |
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||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42215481 |
tccagcatattttctgtataatgattataatccctattagctatagtatatgcccactactccactagcagttaattaacctcgt |
42215565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 733 - 796
Target Start/End: Original strand, 20230640 - 20230703
Alignment:
| Q |
733 |
acatttatcaccaatcgttttaggataaatttaaataattatccagccttatgttgaaattatt |
796 |
Q |
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||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
20230640 |
acatttaccaccaatcattttaggataaattaaaataattatccagccttatgttgaaattatt |
20230703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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