View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-3 (Length: 898)
Name: NF4937-Insertion-3
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 545; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 11 - 645
Target Start/End: Complemental strand, 53435617 - 53434986
Alignment:
| Q |
11 |
tatacattgcttatatacacatcgcttgcattatatcatatttactctaactagttgctacctccacttcagagcagttgtgtatcaaattatcgtttat |
110 |
Q |
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| T |
53435617 |
tatacattgcttatatacacatcgcttgcattatatcatatttactctaactagttgctacctccacttcagagcagttgtgtatcaaattatcgtttat |
53435518 |
T |
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| Q |
111 |
aattgtggttatagcacaaaaaacaacatatttcttcgaagagtaatgataacttttgtgacaaaactactatatattttttcaaatgacaaacttgcgt |
210 |
Q |
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| T |
53435517 |
aattgtggttatagcacaaaaaacaacatatttcttcgaagagtaatgataacttttgtgacaaa-ctactatatattttttcaaatgacaaacttgcgt |
53435419 |
T |
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| Q |
211 |
gattaattatatagtagtgcttgagcctatatacctgcaatgcgcatgcattaattccaccaaaacattttgatttttaatttcactttatattattatt |
310 |
Q |
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| T |
53435418 |
gatgaattata--gtagtgcttgagcctatataccagcaatgcgcatgcattaattccaccaaaacattttgatttttaatttcactttatgttattatt |
53435321 |
T |
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| Q |
311 |
gatgaaaagaaagataaaattacaaactcaaccacggcaagctacggctctatacattataatcacctattaaaatgctcaaagaaagaaaaatatcaaa |
410 |
Q |
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| T |
53435320 |
gatgaaaagaaagataaaattacaaactcaaccacggcaagctacggctctatacattataatcacctattaaaatgctcaaagaaagaaaaatatcaaa |
53435221 |
T |
|
| Q |
411 |
actgttgtgcccaatcaaagaaattaatggataaaataacgttaattagcttgtaaaattgccctatagttagcttctataataacacaagaataacata |
510 |
Q |
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| T |
53435220 |
actgttgtacccaatcaaagaaattaatggataaaataacgttaattaggttgtaaaattgccctatagttagcttctataataacacaagaataacata |
53435121 |
T |
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| Q |
511 |
aattcttaatgcctaaattcaaaatannnnnnnnnnnnnnnnngaaggagcctaatttcaaaatattgtttgcccaactatttatttatttaaagtattt |
610 |
Q |
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| T |
53435120 |
aattcttaatgcctaaattcaaaatatttttgtttttgtttttgaaggagcctaatttcaaaatattgtttgcccaactatttatttatttaaagtattt |
53435021 |
T |
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| Q |
611 |
acaatttaaaacaacctactatatatgattttaac |
645 |
Q |
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| T |
53435020 |
acaatttaaaacaacctactatatatgattttaac |
53434986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 656 - 898
Target Start/End: Complemental strand, 53434958 - 53434711
Alignment:
| Q |
656 |
gataaaatatgattaaacccaagtgtaaaatgatatcgctaagcgatgacatatta------gtatgcctttatgatgatataactttctgaaaatacta |
749 |
Q |
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| T |
53434958 |
gataaaatatgattaaacccaagtgtaaaatgatatcgctaagcgatgacatattactattagtatgcctttatgatgatataactttctgaaa-tacta |
53434860 |
T |
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| Q |
750 |
tgttaccataaatcatataaaccaatgctgacacaataaagcactgattaaacttatttactttaactagtccgtggcttcttatataaatgtgtgcgag |
849 |
Q |
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| T |
53434859 |
tgttaccataaatcatataaaccaatgctgacacaataaagcactgattaaacttatttactttaactagtccgtggcttcttatataaatgtgtgcgag |
53434760 |
T |
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| Q |
850 |
ggggagctaataagcatactcatcgactaattaaatcatactatcaaaa |
898 |
Q |
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| T |
53434759 |
ggggagctaataagcatactcatcaactaattaaatcatactatcaaaa |
53434711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 802 - 869
Target Start/End: Original strand, 48370508 - 48370576
Alignment:
| Q |
802 |
cttatttactttaactagtccg-tggcttcttatataaatgtgtgcgagggggagctaataagcatact |
869 |
Q |
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| T |
48370508 |
cttatttactttaactagtccaatggctttttatataaatgtgtgagggcgggagctaacaagcatact |
48370576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 803 - 873
Target Start/End: Complemental strand, 26099686 - 26099615
Alignment:
| Q |
803 |
ttatttactttaactagtccg-tggcttcttatataaatgtgtgcgagggggagctaataagcatactcatc |
873 |
Q |
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| T |
26099686 |
ttatttactttaattcgtccaatggcttcttatataaatttgtgagcgtgggagctaacaagcatactcatc |
26099615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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