View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-4 (Length: 876)
Name: NF4937-Insertion-4
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 7822371 - 7822924
Alignment:
| Q |
8 |
atctgatccgactctgactcgagtgattaatctttgcagataaccaagttggtttttgaaaccaattgagacttttacttgtcacattgaagactctccc |
107 |
Q |
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| T |
7822371 |
atctgatccgactctgactcgagtgattaatctttgcagataaccaagttggtttttgaaaccaattgagacttttacttgttacattgaagactctccc |
7822470 |
T |
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| Q |
108 |
aaggatttatttatacaaggtaaattgtgggtttcacattgttaccccaattttccttttttccatatggagatgagannnnnnnaggccatctcagttg |
207 |
Q |
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| T |
7822471 |
aaggatttatttatacaaggtaaattgtgggtttcacattgttaccccaattttccttttttccatatggagatgagatttttttaggccatctcagttg |
7822570 |
T |
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| Q |
208 |
tattgtatttaatttatgtgcattaatatatcttgcactnnnnnnnngaaaacaattttacaatgctccggggatgctaaggagatggctacaactgagt |
307 |
Q |
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| T |
7822571 |
tattgtatttaatttatgtgcattattatatcttgcactaaaaaaaagaaaacaattttacaatgctccggggatgctaaggagatggctacaactgagt |
7822670 |
T |
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| Q |
308 |
cgtcccgagttcggatccgagtgaaggtagcgagttgatgatgatcattatcattattattattttcatttctggtaacttttgtaaactactgtgtatg |
407 |
Q |
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| T |
7822671 |
cgtcccgagttcggatccgagtgaaggtagcgagttgatgagg------atcattattattattttcatttctggtaacttttgtaaactactgtgtatg |
7822764 |
T |
|
| Q |
408 |
taatcttgattcatgttcatgaaatgaaatggagctgtagagaatattgaattttcaaaatttcttcgtactatctctttcattatttgtattgactgct |
507 |
Q |
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| T |
7822765 |
taatcttgattcatgttcatgaaatgaaatggaactgtagagaatattgaattttcaaaatttcttcgtactatctctttcattatttgtatcgactact |
7822864 |
T |
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| Q |
508 |
atttatggcatcttttcaccactnnnnnnntataattactttgtcattttttatcaagtg |
567 |
Q |
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| T |
7822865 |
atttatggcatcttttcaccactaaaaaaatataattaccatgtcattttttatcaagtg |
7822924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 706 - 876
Target Start/End: Original strand, 7823063 - 7823233
Alignment:
| Q |
706 |
gttgtgtatggacgttgctatcagagcagcagttgtgggagttataatgataccaacccacgtgaactttagaacaaagtctctgcttgcttttacttgc |
805 |
Q |
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| T |
7823063 |
gttgtgtatggacgttgcaatcagagcagcagttgtgggagttataatgataccaacccacgtgaactttagaacaaagtctctgcttgcttttacttgc |
7823162 |
T |
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| Q |
806 |
tctgatttcgtctgattctgttttctaccaagcaccaacccttatcattcaggtttcttccacccacttga |
876 |
Q |
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| T |
7823163 |
tctgatttcatctgattctgttttctaccaagcaccaacccttatcattcaggtttcttccacccacttga |
7823233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 611 - 641
Target Start/End: Original strand, 7822968 - 7822998
Alignment:
| Q |
611 |
tgatttttgaagttcattccatgcctagctg |
641 |
Q |
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| T |
7822968 |
tgatttttgaagttcattccatgcctagctg |
7822998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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