View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-5 (Length: 581)
Name: NF4937-Insertion-5
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 48570387 - 48569817
Alignment:
| Q |
8 |
atatggaagcacttaaatcgatatcatgtgatattcacagcctatcaccacaagtgataatgtttgctattaattttgtttttatatctgtgttcttgat |
107 |
Q |
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| T |
48570387 |
atatggaagcacttaaatcgatatcatgtgatattcacagcctctcaccacaagtgataatgtttgctattaattttgtttttatat--gtgttcttgat |
48570290 |
T |
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| Q |
108 |
aaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaa |
207 |
Q |
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| T |
48570289 |
aaatctgaaattttagcttctttaatcttcaaaaccgtcaccggcatcttgaaaactgaaagatgaaaaattggaattgaatttagcaccgaattaagaa |
48570190 |
T |
|
| Q |
208 |
gtacaattgtcccttcgaggctaatatgcttatttttccccatgaccacgagttcaatttctccgacatt----tgttccaacgtcttccacgtggcctc |
303 |
Q |
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| T |
48570189 |
gtacagttgtcccttcgaggctaatatgcttattt--ccccatgaccacgagttcaatttctccgacattaatttgttccaacgtcttccatgtggcctc |
48570092 |
T |
|
| Q |
304 |
tctacccggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaaggttacaatgcttatttcaagtaaaata |
403 |
Q |
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| T |
48570091 |
tctacccggatttgcccccaccagcaatcccaaatatttaaatggaagtctcccttcactaaaattcaaaaaggttacgatgcttatttcaagtaaaata |
48569992 |
T |
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| Q |
404 |
tttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatactagttatagttaagagaggtatctacatgt |
503 |
Q |
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| T |
48569991 |
tttcgccaactaagattgagctagcgatagggttagactctcgcaacatgacaaactcaagtttgaatactagttatagttaagagaggtatctacatgt |
48569892 |
T |
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| Q |
504 |
tgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattttaca |
578 |
Q |
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| T |
48569891 |
tgcgatccgacacaacttgaataggattacctcatatggaggatcctctagaaaaccaaaactatatattttaca |
48569817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 13853148 - 13853082
Alignment:
| Q |
310 |
cggatttgcccccaccggcaatcccaaatattttaacggaagtctcccttcactaaaattcaaaaag |
376 |
Q |
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| T |
13853148 |
cggattagcccccaccggtaatcccaaatacttaaatggaagcctcccttgactacaattcaaaaag |
13853082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 4864511 - 4864593
Alignment:
| Q |
133 |
tcttcaaaaccgtcaccggcatcttgaaaacggaaagatgaaaaattggaattgaatttagcaccgaattaagaagtacaatt |
215 |
Q |
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| T |
4864511 |
tcttcaaaactttcaccggcattttgaaaaaggaaagatgaaagataggaatagaattcaaaatagaattaagaaggacaatt |
4864593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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