View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-6 (Length: 536)
Name: NF4937-Insertion-6
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-6 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 267 - 536
Target Start/End: Complemental strand, 28524137 - 28523861
Alignment:
| Q |
267 |
catgtggtagggaaggactaaagggggtttcttctttgtttcgtgttatgcaagctcctatgagaaaccccaatcacacaaagaagatacacttttgttt |
366 |
Q |
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| T |
28524137 |
catgtggtagggaaggactaaagggggtttcttctttgtttcgtgttatgcaagctcctatgagaaaccccaatcacacaaagaagatacacttttgttt |
28524038 |
T |
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| Q |
367 |
taatttgttcttggtgtctttgtgttcacgggtttgactagtactccttgtacacgaatgta------ta-aagacatgtttgtacaatgaagttgtaca |
459 |
Q |
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| T |
28524037 |
taatttgttcttggtgtctttgtgttcaagggtttgactagtacttcttttacacaaatgtactgttgtatatctcatgtttgtacaatgatgttgtaca |
28523938 |
T |
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| Q |
460 |
attttaaaacaatttgaactatttaccggttacaattatgacattactagtatcctataattacaagtgaatgttga |
536 |
Q |
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| T |
28523937 |
attttaaaacaatttgaactatttaacggttacaattatgacattactagtatcctataattacaagtgaatgttga |
28523861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 28524398 - 28524194
Alignment:
| Q |
6 |
catagataatatattattctcttccatagtacactttcttttgtatctctatgaaacatgtgagatccattgctcttagatttgtcatgctttttatcta |
105 |
Q |
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| T |
28524398 |
catagataatatattattctcttccatagtacacattcttttgtatctctatgaaacatgtgagatccattgctcttagatttgtcatgctttttatcta |
28524299 |
T |
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| Q |
106 |
catgatcagtttactattacctattcaagttgggtattcaatcctttgtctaaacgctatcatctacttttattgttccaactcttttcatgatcttcaa |
205 |
Q |
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| T |
28524298 |
catgatcagtttactattacctattcaagttgggtattcaatcctttgtctaaacgctatcatctacttttattgttccaactcttttcatgatattcaa |
28524199 |
T |
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| Q |
206 |
ttgat |
210 |
Q |
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|||| |
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| T |
28524198 |
atgat |
28524194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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