View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937-Insertion-8 (Length: 326)
Name: NF4937-Insertion-8
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937-Insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 8 - 320
Target Start/End: Original strand, 45887281 - 45887589
Alignment:
| Q |
8 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctatttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatca |
107 |
Q |
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| T |
45887281 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatca |
45887380 |
T |
|
| Q |
108 |
attaaatattggtgtgagataattttctaagatatat----------agaggccgtacttctatgnnnnnnnattcctgttccgtatcattatggatttg |
197 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
45887381 |
attaaatattggtgtgagattattttctaagatatatatagccagacagaggccgtacttctatctttttttattcctgttccgtatcattatgaatttg |
45887480 |
T |
|
| Q |
198 |
aatttttgtttgatctattcaaactcattctcgtagtattaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatgatt |
297 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
45887481 |
aatttttgtttgatctattcaaactcattcttgtggtattaattactaatctagtattgttttttc--------------tgcttaaatattgaatgatt |
45887566 |
T |
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| Q |
298 |
actggttactgatttttcttttt |
320 |
Q |
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||||||||||||||||||||||| |
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| T |
45887567 |
actggttactgatttttcttttt |
45887589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 326
Target Start/End: Original strand, 45703475 - 45703792
Alignment:
| Q |
8 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctatttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatca |
107 |
Q |
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| T |
45703475 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctacttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatca |
45703574 |
T |
|
| Q |
108 |
attaaatattggtgtgagataattttctaagatatat----------agaggccgtacttctatgnnnnnnnattcctgttccgt--atcattatggatt |
195 |
Q |
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|||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||| |
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| T |
45703575 |
attaaatattggtgtgagattattttctaagatatatatagccagacagaggccgtacttctatctttttttattcctgttccgtacatcattatgaatt |
45703674 |
T |
|
| Q |
196 |
tgaatttttgtttgatctattcaaactcattctcgtagtattaattactaatctagtattgttttttctgtttttattattgtgcttaaatattgaatga |
295 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45703675 |
tgaatttttgtttgatctattcaaactcattcttgtggtattaattactaatctagtattgttttttc--------------tgcttaaatattgaatga |
45703760 |
T |
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| Q |
296 |
ttactggttact-gatttttctttttattact |
326 |
Q |
| |
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|||||||||||| ||||||||||||| ||||| |
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| T |
45703761 |
ttactggttactggatttttcttttttttact |
45703792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 45650224 - 45650089
Alignment:
| Q |
8 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctatttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatca |
107 |
Q |
| |
|
||||| |||||||| |||||| ||| ||||||||||||||| ||| | ||||||||||||||||||| || ||||| | |||||||||||||||||||| |
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| T |
45650224 |
gcaaccaccaccactactccttccacacaaagtgcatcttcatctactagtatctcaccaattgttgctttatttttcactgtttcatggatcttgatca |
45650125 |
T |
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| Q |
108 |
attaaatattggtgtgagataattttctaagatata |
143 |
Q |
| |
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||| ||| |||||||||||||||||| ||||||| |
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| T |
45650124 |
gttatatactggtgtgagataattttccgagatata |
45650089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 45642965 - 45642850
Alignment:
| Q |
9 |
caacaaccaccaccactcctaccatgcaaagtgcatcttcagctatttgtatctcaccaattgttgccttcttttttattgtttcatggatcttgatcaa |
108 |
Q |
| |
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|||| |||||||| ||||||||||| ||||||||||||||||||| | |||||||||| |||||| |||||||| | |||||| |||||||||||| | |
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| T |
45642965 |
caaccaccaccactactcctaccatacaaagtgcatcttcagctactaccatctcaccaactgttgctttctttttcactgtttcctggatcttgatcca |
45642866 |
T |
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| Q |
109 |
ttaaatattggtgtga |
124 |
Q |
| |
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| | ||||| |||||| |
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| T |
45642865 |
tcatatattagtgtga |
45642850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 1193588 - 1193690
Alignment:
| Q |
8 |
gcaacaaccaccaccactcctaccatgcaaagtgcatcttcagctatttgtatctcaccaattgttg---ccttcttttttattgtttcatggatcttga |
104 |
Q |
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||||| |||||||| |||||||| | |||||||||||||||||||| | | ||| ||||||||||| | || ||||| ||||||||||||||||||| |
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| T |
1193588 |
gcaactaccaccactactcctactacgcaaagtgcatcttcagctactaggctctaaccaattgttgcttctttatttttcattgtttcatggatcttga |
1193687 |
T |
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| Q |
105 |
tca |
107 |
Q |
| |
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||| |
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| T |
1193688 |
tca |
1193690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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