View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4937_high_5 (Length: 228)

Name: NF4937_high_5

Description: NF4937

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4937_high_5

[»] chr2 (2 HSPs)

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 7 - 228

Target Start/End: Complemental strand, 43246097 - 43245872

Alignment:

Q	7	tttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaataaataaaagagctgctatat--ttcttaatacttgaaaacata	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43246097	tttgcttggtattgttatttaagcaaagaatgtaattggttgtttatgaaatggaataaataaaagagctgctatatatttcttaatacttgaaaacata	43245998	T

Q	105	tactctannnnnnn--ccttcatatttgcagtttttctataactattacatgtttcatagtaaacatgtacaatattataaggtgtatgtaaaaggtatt	202	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43245997	tactctatttttttttccttcatatttgcagtttttctataactattacatgtttcatagtaaacatgtacaatattataaggtgtatgtaaaaggtatt	43245898	T

Q	203	aaaaggagtatgatgtttttatcaca	228	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	43245897	aaaaggagtatgatgtttttatcaca	43245872	T

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Target: chr2; HSP #2

Raw Score: 31; E-Value: 0.00000002

Query Start/End: Original strand, 120 - 189

Target Start/End: Complemental strand, 8551195 - 8551125

Alignment:

Q	120	cttcatatttgcagtttttc-tataactattacatgtttcatagtaaacatgtacaatattataaggtgta	189	Q
		\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8551195	cttcataattgcaatttttcctataattatgacacgttttttagtaaagatgtacaatattataaggtgta	8551125	T

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