View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937_low_1 (Length: 571)
Name: NF4937_low_1
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 9 - 551
Target Start/End: Original strand, 2531245 - 2531802
Alignment:
| Q |
9 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
108 |
Q |
| |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531245 |
agcagagatgtcaacactggtcatacccgtaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
2531344 |
T |
|
| Q |
109 |
gtatttagtatatctaacgttcacttttaagacctagtacaataaacttataatcatatgtataagtttt------------aattgcggcttttaaaat |
196 |
Q |
| |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2531345 |
gtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgtatttttaattgcggcttttaaaat |
2531444 |
T |
|
| Q |
197 |
atttaaagaaattatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531445 |
atttaaagaaattatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagt |
2531544 |
T |
|
| Q |
297 |
catattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatc |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531545 |
catattggattaccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatc |
2531644 |
T |
|
| Q |
397 |
atgtgctcgacctggggtatgtatcatcttaaacaattgaca-ccccctacacacac--gnnnnnnngtgattgaacgaccaaattaatatttttcttga |
493 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
2531645 |
atgtgctcgacctggggtatgtatcatcttatacaattgacatccccctacacacaccaaaaaaaaggtgattgaacgaccaaattaatatttttattga |
2531744 |
T |
|
| Q |
494 |
tgctacaggtcttcttgtttcattcatgcaaaggtctcaatgttagtaacctgagtat |
551 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2531745 |
tgctacaggtcttcttgtttcattcatgcaagggtctcaatgttagtaatctgagtat |
2531802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Original strand, 2540581 - 2541008
Alignment:
| Q |
9 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgcaccaacaaaaatattcttattcag |
108 |
Q |
| |
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||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
2540581 |
agcagagatgtcaacactggttataccagtaggaaaaacatttatggtgtcgaaactaagttttaacggtccttgcaccaacaaacatattcttattcag |
2540680 |
T |
|
| Q |
109 |
gtatttagtatatctaacgttcacttttaagacctagtacaataaacttataatcatatgtataagttttaattgcggcttttaaaatatttaaagaaat |
208 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
2540681 |
gtatttaatatatctaacattcacttttaagacctagtacaataaacttataatcat-tgtataagttttaattgcggcttttaaaatgattaaagaaat |
2540779 |
T |
|
| Q |
209 |
tatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggatta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
2540780 |
tatatttgttttgtatttttgccatctatctttttgtagcttgaagggaaaatagttgcaccttctaaggtacattggaaagctcagtcatattggatta |
2540879 |
T |
|
| Q |
309 |
ccgtgcaatctgtagaaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgctcgacc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2540880 |
ccgtgcaatctgtagaaggactcacaattaatggtcatggtcgaggagtactcgatggagatggttcgacttggtggcaatgcaaatcatgtgatcgacc |
2540979 |
T |
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| Q |
409 |
tggggtatgtatcatcttaaacaattgac |
437 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
2540980 |
tggggtatgtatcatcttaaacaattgac |
2541008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 461 - 551
Target Start/End: Original strand, 2541255 - 2541345
Alignment:
| Q |
461 |
gtgattgaacgaccaaattaatatttttcttgatgctacaggtcttcttgtttcattcatgcaaaggtctcaatgttagtaacctgagtat |
551 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2541255 |
gtgattgaacgaccaaattaatatttttattgatgctacaggtcttcttgtttcattcatgcaagggtctcaatgttagtaatctgagtat |
2541345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 225 - 385
Target Start/End: Original strand, 1829582 - 1829743
Alignment:
| Q |
225 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtag |
323 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||||| | ||||||||||| || |||| | || |||||| || ||||||||| |||| | ||| |||| |
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| T |
1829582 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1829681 |
T |
|
| Q |
324 |
aaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtgg |
385 |
Q |
| |
|
| |||||||||||||| |||||||||| ||||| ||| |||||||| ||||| ||||||||| |
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| T |
1829682 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1829743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 225 - 385
Target Start/End: Original strand, 1864027 - 1864188
Alignment:
| Q |
225 |
ttttgccatctatcttt-ttgtagcttgaagggaaaatagttgcaccttcaaaggtaggttggaaagctcagtcatattggattaccgtgcaatctgtag |
323 |
Q |
| |
|
|||| |||||||||| | ||| ||||||||||| | ||||||||||| || |||| | || |||||| || ||||||||| |||| | ||| |||| |
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| T |
1864027 |
tttttccatctatctatattgcagcttgaagggcagatagttgcaccctctaaggcaaattcgaaagcacaatcatattggtttactattgaatatgtaa |
1864126 |
T |
|
| Q |
324 |
aaggactcacaattgaaggtaatggtcgaggagtactcgatggagatggttcgacttggtgg |
385 |
Q |
| |
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| |||||||||||||| |||||||||| ||||| ||| |||||||| ||||| ||||||||| |
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| T |
1864127 |
atggactcacaattgatggtaatggtcaaggaggacttgatggagacggttctacttggtgg |
1864188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1827848 - 1827912
Alignment:
| Q |
15 |
gatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
79 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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|
| T |
1827848 |
gatgtcaacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1827912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 1862293 - 1862357
Alignment:
| Q |
15 |
gatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtc |
79 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
1862293 |
gatgtcaacactagttataccggcaggaaaaacatttatggtgtcgaaagtaatttttagcggtc |
1862357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 2562429 - 2562505
Alignment:
| Q |
9 |
agcagagatgtcaacactggtcataccagcaggaaaaacatttatggtgtcgaaactaagttttagcggtccttgca |
85 |
Q |
| |
|
||||| |||||||||||| | |||||||| ||||||| || |||||||||||| || |||||| |||||||||| |
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| T |
2562429 |
agcagggatgtcaacactaataataccagctggaaaaaaatacatggtgtcgaaagcaaattttagtggtccttgca |
2562505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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