View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4937_low_2 (Length: 372)

Name: NF4937_low_2
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4937_low_2
NF4937_low_2
[»] chr8 (4 HSPs)
chr8 (218-363)||(14223004-14223149)
chr8 (21-156)||(14222808-14222941)
chr8 (232-272)||(11815810-11815850)
chr8 (36-68)||(14226736-14226768)
[»] chr3 (3 HSPs)
chr3 (218-300)||(16151808-16151890)
chr3 (218-261)||(16152731-16152774)
chr3 (109-154)||(16151954-16151997)
[»] chr2 (2 HSPs)
chr2 (231-267)||(18638544-18638580)
chr2 (226-272)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (226-275)||(9878067-9878116)
chr5 (226-275)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (226-272)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (225-263)||(10341030-10341068)
[»] chr1 (1 HSPs)
chr1 (308-340)||(40158374-40158406)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 7e-65; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 218 - 363
Target Start/End: Original strand, 14223004 - 14223149
Alignment:
Q  218 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttga 317  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14223004 gaaatgcaacacctgacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttga 14223103  T
Q  318 tcagaagtgtctgtgctatagagatgatattattcattttgatgat 363  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  14223104 tcagaagtgtcggtgctatagagatgatattattcattttgatgat 14223149  T

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Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 21 - 156
Target Start/End: Original strand, 14222808 - 14222941
Alignment:
Q  21 gttcttccattcgcaccaggtatttttctctttctcttcatcttcattatcgcatttacttttatctgttgtttggttgatcaataagatgttttcggaa 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14222808 gttcttccattcgctccaggtatttttctctttctcttcatcttcattatcgcttttacttttatctgttgtttggttgatcaataagatgttttcggaa 14222907  T
Q  121 tatgggatttcacaccttactatactgaaagcttcg 156  Q
    ||||||||||||||||||||  ||||||||||||||    
T  14222908 tatgggatttcacaccttac--tactgaaagcttcg 14222941  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 11815810 - 11815850
Alignment:
Q  232 gacacgacactgacatgtcgacaccaataatattttgagaa 272  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaa 11815850  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 14226736 - 14226768
Alignment:
Q  36 ccaggtatttttctctttctcttcatcttcatt 68  Q
    |||||||||||||||||||| ||||||||||||    
T  14226736 ccaggtatttttctctttcttttcatcttcatt 14226768  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 218 - 300
Target Start/End: Complemental strand, 16151890 - 16151808
Alignment:
Q  218 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac 300  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16151890 gaaatgcaacaccggacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac 16151808  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 261
Target Start/End: Complemental strand, 16152774 - 16152731
Alignment:
Q  218 gaaatgcaacaccggacacgacactgacatgtcgacaccaataa 261  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  16152774 gaaatgcaacatcggacacgacactgacatgtcgacaccaataa 16152731  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 16151997 - 16151954
Alignment:
Q  109 atgttttcggaatatgggatttcacaccttactatactgaaagctt 154  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16151997 atgtttttggaatatgggatttcacaccttac--tactgaaagctt 16151954  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 18638544 - 18638580
Alignment:
Q  231 ggacacgacactgacatgtcgacaccaataatatttt 267  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638544 ggacacgacactgacatgtcgacaccaataatatttt 18638580  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 42205919 - 42205873
Alignment:
Q  226 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 272  Q
    ||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  42205919 acaccggacacgacattgacatgccaacaccaataataatttgagaa 42205873  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 9878116 - 9878067
Alignment:
Q  226 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 275  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  9878116 acaccgaacaagacactgacacgtcgacaccaataataatttgagaatat 9878067  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 9897966 - 9897917
Alignment:
Q  226 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 275  Q
    |||||||||||| |||| |||  ||||||||||||||| |||||||||||    
T  9897966 acaccggacacggcactcacacatcgacaccaataataatttgagaatat 9897917  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 272
Target Start/End: Complemental strand, 18192 - 18146
Alignment:
Q  226 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 272  Q
    ||||| ||||||||||||||| ||||||||| |||| ||||||||||    
T  18192 acaccagacacgacactgacacgtcgacaccgataaaattttgagaa 18146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 10341030 - 10341068
Alignment:
Q  225 aacaccggacacgacactgacatgtcgacaccaataata 263  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10341030 aacaccggacatgacactgacatgtcgacaccagtaata 10341068  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 40158406 - 40158374
Alignment:
Q  308 acgtatttgatcagaagtgtctgtgctatagag 340  Q
    ||||||||||||||||||||| |||||||||||    
T  40158406 acgtatttgatcagaagtgtcggtgctatagag 40158374  T

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