View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937_low_3 (Length: 347)
Name: NF4937_low_3
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 14538616 - 14538273
Alignment:
| Q |
12 |
atagggttgggagagcgttcaaatcaacaagttaatgatttaggatcactaagtgatcatatatcacatatgttcacgcttaaggaagactaaaatagtt |
111 |
Q |
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| T |
14538616 |
atagagttcggagagcgttcaaatcaacaagttaatgatttaggatcactaagtgatcataaaccacatatgttcatgcttaaggaagactaaaatagtt |
14538517 |
T |
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| Q |
112 |
gggatcattacattaaattaagagcatccacacaaatgagttgacaat--------------------aggaatatctaaatctaaaattttaaggcaat |
191 |
Q |
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| T |
14538516 |
gggatcattatattaaattaagagcatccacacaaacgagttgacaaccactaaaattttaagtcaagagggatttctaaatctaaaattttaaggcaat |
14538417 |
T |
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| Q |
192 |
agagatatgataaattccttaatgtcttaatcaatgtatatattccttaatctaatttgaaacttcccactcacacatgattaactacaccaacttagat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
14538416 |
agagatatgataaattccttaatgtcttaatcaatgtatatattccttaatctaatttgaaacttcccactcacacatgattaactacatcaacttagat |
14538317 |
T |
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| Q |
292 |
actattggttttaatttagagaataatttagtagttgagtttga |
335 |
Q |
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|| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
14538316 |
tctcttggttttaatttagagattaatttagtagttgagtttga |
14538273 |
T |
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