View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937_low_4 (Length: 314)
Name: NF4937_low_4
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 23167526 - 23167416
Alignment:
| Q |
187 |
tctatagactcttgtatttgattaaaggataaaatcaaattataaacattagtctgaataatccaagttttcaaaaattattagcatcctcaagtaaccc |
286 |
Q |
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| T |
23167526 |
tctagagactcttgtatt-gattgaagggtaaactaaaattataaacatcagtctgaataatccaagttttcaaaaattattagcatcctcaagtaaccc |
23167428 |
T |
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| Q |
287 |
tcagatcataat |
298 |
Q |
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| T |
23167427 |
tcagatcataat |
23167416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 23169157 - 23169091
Alignment:
| Q |
35 |
aatggctacacatatctaacaatctcgtattcgctggattttgtgctctgcttttcttttgccttca |
101 |
Q |
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| T |
23169157 |
aatggcttctcatatctatcaatctcgtattcgcttgattttgtgctttgcttttcttttgctttca |
23169091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21869223 - 21869155
Alignment:
| Q |
13 |
aatataaggtaaaatcttacacaatggctacacatatctaacaatctcgtattcgctggattttgtgct |
81 |
Q |
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| T |
21869223 |
aatataaggtgaaatcctacacaatggtttctcatgcctatcaatctcgtctttgctggattttgtgct |
21869155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 298
Target Start/End: Original strand, 9358214 - 9358252
Alignment:
| Q |
260 |
aaaattattagcatcctcaagtaaccctcagatcataat |
298 |
Q |
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| T |
9358214 |
aaaattattagcatcctcaagtaaccctcagatcataat |
9358252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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