View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4937_low_6 (Length: 247)
Name: NF4937_low_6
Description: NF4937
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4937_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 39749572 - 39749791
Alignment:
| Q |
10 |
aagaatattgaaacaaagataactaggtagaatcacttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccata |
109 |
Q |
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| T |
39749572 |
aagaatattgaaacaaagataactaggtagaatcacttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccata |
39749671 |
T |
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| Q |
110 |
gcgaggagcacaatacaaaaccaagaacaatgttatggcaatagcagaggtcgtgtacatgagaaatgctgtaggccnnnnnnngaaagcaataatcagg |
209 |
Q |
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| T |
39749672 |
gcgaggagcacaatacaaaaccaagaacaatgttatggcaatagcagaggtcgtgtacatgagaaatgctgtaggccaaaaaaagaaagcaataatcagg |
39749771 |
T |
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| Q |
210 |
aaaattacatgaatcgtata |
229 |
Q |
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| T |
39749772 |
aaaattacatgaatcgtata |
39749791 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 44563331 - 44563416
Alignment:
| Q |
44 |
acttacagtcaaagacccaactatagagcaaattccaatataaaccaaaatattagattggccatagcgaggagcacaatacaaaa |
129 |
Q |
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| T |
44563331 |
acttacagtcaatgatccaattatggagcatattccaatgtaaacgaagatattagtttggccatagcgaggtgcacaatataaaa |
44563416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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