View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4938-Insertion-2 (Length: 978)

Name: NF4938-Insertion-2
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4938-Insertion-2
NF4938-Insertion-2
[»] chr2 (12 HSPs)
chr2 (7-954)||(9124138-9125084)
chr2 (722-890)||(24227772-24227941)
chr2 (728-889)||(25563968-25564131)
chr2 (812-890)||(28578671-28578751)
chr2 (796-856)||(33013576-33013636)
chr2 (563-626)||(17496390-17496453)
chr2 (576-679)||(19692852-19692955)
chr2 (389-459)||(13896941-13897011)
chr2 (389-459)||(14037558-14037628)
chr2 (761-827)||(16917402-16917468)
chr2 (799-890)||(42297648-42297741)
chr2 (391-451)||(18058394-18058455)
[»] chr4 (2 HSPs)
chr4 (730-894)||(8502320-8502486)
chr4 (756-890)||(43358165-43358302)
[»] chr3 (10 HSPs)
chr3 (729-885)||(10686541-10686699)
chr3 (695-890)||(20648699-20648895)
chr3 (796-890)||(24097484-24097581)
chr3 (389-458)||(9828932-9829001)
chr3 (723-892)||(47597466-47597637)
chr3 (722-853)||(20102326-20102457)
chr3 (540-615)||(27686028-27686103)
chr3 (398-432)||(7913778-7913812)
chr3 (761-827)||(17119062-17119128)
chr3 (414-459)||(2906536-2906581)
[»] chr1 (4 HSPs)
chr1 (683-772)||(14519828-14519915)
chr1 (522-631)||(25517618-25517730)
chr1 (563-631)||(14519996-14520064)
chr1 (387-458)||(1615984-1616055)
[»] chr8 (10 HSPs)
chr8 (387-450)||(34061950-34062013)
chr8 (548-630)||(27138408-27138490)
chr8 (812-890)||(30214212-30214292)
chr8 (498-666)||(5345917-5346085)
chr8 (389-459)||(19342153-19342224)
chr8 (389-459)||(19371651-19371722)
chr8 (785-854)||(10329718-10329787)
chr8 (388-458)||(17871979-17872046)
chr8 (722-779)||(5345773-5345829)
chr8 (398-459)||(29092575-29092636)
[»] chr7 (3 HSPs)
chr7 (761-843)||(39227739-39227821)
chr7 (388-459)||(7144558-7144629)
chr7 (796-890)||(19196957-19197053)
[»] scaffold0194 (1 HSPs)
scaffold0194 (695-831)||(6659-6796)
[»] chr6 (2 HSPs)
chr6 (777-890)||(35036309-35036423)
chr6 (384-437)||(26892169-26892222)
[»] chr5 (1 HSPs)
chr5 (761-856)||(22186035-22186130)


Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 7 - 954
Target Start/End: Complemental strand, 9125084 - 9124138
Alignment:
Q  7 agaaatagatagaatgatgcgataaattaatgtaatatattgatgatgtgataaaaagataaagatgaagagcaagtgagatgtttgaaaaataaaggat 106  Q
    |||||||||||||||||||  ||||||    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9125084 agaaatagatagaatgatgtaataaat----gtgatatattgatgatgtgataaaaagatagagatgaagagcaagtgagatgtttgaaaaataaaggat 9124989  T
Q  107 atttatatatcattttttataaatcttttactttcaagtgctgtcatgttttctttccgnnnnnnnnnnnnnngtgctctcatgtttatggcagcgaaaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||  ||||||||||    
T  9124988 atttatatatcattttttataaatcttttactttcaagtgctgtcatgttttctttccgaaaaaaaaaa----gtgctctcatgtttacagcagcgaaaa 9124893  T
Q  207 taatactatgatcatgatcggttggttaggttgatccgcacatctattaataagtatttgctcttttctggactatttgtccatatttcatggnnnnnnn 306  Q
    |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||| || ||||||||           
T  9124892 taatactatgatcatgattggttggttaggttaatccgcacatttattaataagtctttgctcttttctggactatttgtcgatgtttcatggttttttc 9124793  T
Q  307 nnnnncaaaatatgaaataaatgaaatttacttgtatagtattcnnnnnnnnaccaaattatcctctaactgaaactgattttgttgaactaaaatgagt 406  Q
         ||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9124792 tttttcaaaatatgaaataaatgaaatttacttgtatagtatttttttttttaccaaattatcctctaactgaaactgattttgttgaactaaaatgagt 9124693  T
Q  407 tttaaacaatggctctaaagttttgacgataccaatgtataaaagaataattgaataatgtgtta-tgtgtgttcaagtcttcaaaactaca----taaa 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||   |||||| ||||||||||||| ||||||||||||    ||||    
T  9124692 tttaaacaatggctctaaagttttgacgataccaatgtataaaagaacaattgaat---gtgttaatgtgtgttcaagttttcaaaactacagagttaaa 9124596  T
Q  502 ttccgactctcgaatgcaaattttagttttgaaacatca-gactttgaacgcataagaaataatctaaagcaaaagagaaacttatatgacttcgatcaa 600  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  9124595 ttccgactctcgaatgcaaattttagttttgaaacatcaagactctgaacgcataagaaataatctgaagcaaaagagaaacttatatgactttgatcaa 9124496  T
Q  601 aatctgaataaaggtcaaccagaaagtcaacgcttagatcataagatatttttctctaataagcatctaaaggaatgaaaactctgaaggtgatgtcaac 700  Q
    ||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |    
T  9124495 aatctgaataaaggtcaattagaaagtcaacacttagatcataagatatttttctctaataaacatctgaaggaatgaaaactctgaaggtgatgtcagc 9124396  T
Q  701 agctgaagactttgacctaacttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaa 800  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9124395 agctgaagactttgacccaacttgtcgtcttctgaaggaatgtcaatattagaatcagagtagtacaatttgtcttcttttgttcacgtgtatatacaaa 9124296  T
Q  801 caaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagg-attcgaatgagtactcaacgacgttatccatttgaagaagc-aa 898  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  9124295 caaagaaatttaaggacaaagagaatgtaacatatcattatattataagcaaaggaattcgaatgagtactcaacgacgttatccatttgaagaagcaaa 9124196  T
Q  899 aaaaggacttctatcagtttac-agtgcccttactctgtc-aattacatagcacacaa 954  Q
    |||||||||||||||||||||| |||| | |||||||||| |||||||||||||||||    
T  9124195 aaaaggacttctatcagtttacaagtgtcattactctgtcaaattacatagcacacaa 9124138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 722 - 890
Target Start/End: Original strand, 24227772 - 24227941
Alignment:
Q  722 ttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaag 821  Q
    ||||| ||||| | |||||| ||  ||||||| ||| ||||||| |||||| |||||| ||  ||| || | ||||||| ||||||| | ||||| ||||    
T  24227772 ttgtcatcttcaggaggaatatcaatattagattcaaagtagtagaatttgtcttcttctgaccac-tgcagatacaaaaaaagaaattcaaggataaag 24227870  T
Q  822 agaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    |||||||||||||| ||||| ||| |||||||| |  ||||||||| ||||||||||| ||||||||||||    
T  24227871 agaatgtaacatattattatgttagaagcaaagaaatttcgaatgactactcaacgacattatccatttga 24227941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 728 - 889
Target Start/End: Original strand, 25563968 - 25564131
Alignment:
Q  728 tcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatg 827  Q
    |||||||||||||| || |||| ||| | ||||||||| |||||| |||||| ||  |||||||| | ||||||||||||| | ||  ||||||||||||    
T  25563968 tcttctgaaggaatatcactatcagacttagagtagtataatttgtcttcttctgaccacgtgtagaaacaaacaaagaaattcaaaaacaaagagaatg 25564067  T
Q  828 taacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttg 889  Q
     |||| |||||| ||||  ||| ||| ||  ||||||||| ||||||||||| ||| |||||||    
T  25564068 caacaaatcattctatttgaagaaaatgaatttcgaatgactactcaacgacattaaccatttg 25564131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 812 - 890
Target Start/End: Original strand, 28578671 - 28578751
Alignment:
Q  812 aaggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    ||||||||||| ||||||||  |||||||||||||||| ||||||  || |||||| ||||||| ||| ||||||| ||||    
T  28578671 aaggacaaagataatgtaacgaatcattatattataagtaaaggaactttgaatgattactcaatgacattatccaattga 28578751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 796 - 856
Target Start/End: Original strand, 33013576 - 33013636
Alignment:
Q  796 acaaacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga 856  Q
    ||||||||||||| | ||| |||| |||||||||||| |||||| |||||||| |||||||    
T  33013576 acaaacaaagaaattcaagaacaacgagaatgtaacagatcattctattataatcaaagga 33013636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 626
Target Start/End: Complemental strand, 17496453 - 17496390
Alignment:
Q  563 atctaaagcaaaagagaaacttatatgacttcgatcaaaatctgaataaaggtcaaccagaaag 626  Q
    |||| ||||||| || || |||||||||||| || ||| |||||||||||||||||| ||||||    
T  17496453 atctgaagcaaaggataagcttatatgactttgaacaagatctgaataaaggtcaactagaaag 17496390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 576 - 679
Target Start/End: Original strand, 19692852 - 19692955
Alignment:
Q  576 gagaaacttatatgacttcgatcaaaatctgaataaaggtcaaccagaaagtcaacgcttagatcataagatatttttctctaataagcatctaaaggaa 675  Q
    ||||| |||||||||||| || ||| |||| || |||||||||||| ||||||||| |   ||||||| || | |||| ||| | |||| ||||||||||    
T  19692852 gagaagcttatatgacttggaacaagatctaaagaaaggtcaaccataaagtcaacaccctgatcatatgagacttttatcttagaagcctctaaaggaa 19692951  T
Q  676 tgaa 679  Q
    ||||    
T  19692952 tgaa 19692955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 13897011 - 13896941
Alignment:
Q  389 tgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    |||||||| |||||| ||||||||||||| |||| ||||||||| |||| ||| || | |||||| |||||    
T  13897011 tgttgaaccaaaatgggttttaaacaatgtctcttaagttttgatgataacaaagtttgaaagaaaaattg 13896941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 389 - 459
Target Start/End: Complemental strand, 14037628 - 14037558
Alignment:
Q  389 tgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    |||||||| |||||| ||||||||||||| |||| ||||||||| |||| ||| || | |||||| |||||    
T  14037628 tgttgaaccaaaatgggttttaaacaatgtctcttaagttttgatgataacaaagtttgaaagaaaaattg 14037558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 761 - 827
Target Start/End: Original strand, 16917402 - 16917468
Alignment:
Q  761 tagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatg 827  Q
    |||||||||||  |||||||||  |||||||| |||||||||| |||  | ||||||||||||||||    
T  16917402 tagtacaatttttcttcttttgaccacgtgtagatacaaacaaggaatttcaaggacaaagagaatg 16917468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 799 - 890
Target Start/End: Original strand, 42297648 - 42297741
Alignment:
Q  799 aacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    |||||||||| | ||||||||||| ||| ||| | |||||| ||||| ||| ||| ||  ||| ||||| ||||||||||| ||||||||||||    
T  42297648 aacaaagaaattcaaggacaaagataatataagaaatcattctattagaagaaaatgaacttcaaatgactactcaacgacattatccatttga 42297741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 451
Target Start/End: Original strand, 18058394 - 18058455
Alignment:
Q  391 ttgaactaaaatgagtttta-aacaatggctctaaagttttgacgataccaatgtataaaag 451  Q
    ||||| ||| |||||| ||| ||||||| ||||||||||||||||||| |||| ||||||||    
T  18058394 ttgaaataagatgagtattataacaatgtctctaaagttttgacgataacaatatataaaag 18058455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 730 - 894
Target Start/End: Complemental strand, 8502486 - 8502320
Alignment:
Q  730 ttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatgta 829  Q
    ||||||||||| |||||| | |   ||||||||||||| |||| |||||| || ||| ||| ||| ||||||| ||||| | ||||||||||||||||||    
T  8502486 ttctgaaggaaggtcgctttcaatctcagagtagtacattttgtcttcttctgatcatgtgcataaacaaacagagaaattcaaggacaaagagaatgta 8502387  T
Q  830 acatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttgaagaa 894  Q
    | ||| |||| ||||| ||||||||||  ||| ||||| ||||||||||| ||||||||||||||||    
T  8502386 atataccattctattaaaagcaaaggaatttcaaatgactactcaacgacattatccatttgaagaa 8502320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 756 - 890
Target Start/End: Complemental strand, 43358302 - 43358165
Alignment:
Q  756 cagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaatt-aaggacaaagagaatgtaacatatcattatattataagcaaag 854  Q
    ||||||||||  ||||| |||||| || ||||||||| | || ||||||||||||| ||| ||||||||||||||||  |||||| ||||| |||||||     
T  43358302 cagagtagtattatttgtcttcttgtgatcacgtgtagaaacgaacaaagaaaattcaagcacaaagagaatgtaacggatcattctattagaagcaaaa 43358203  T
Q  855 ga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    ||  ||||||| | ||||| ||||  ||||||||||||    
T  43358202 gaatttcgaataactactcgacgaaattatccatttga 43358165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 729 - 885
Target Start/End: Complemental strand, 10686699 - 10686541
Alignment:
Q  729 cttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatgt 828  Q
    |||||||||||||||| |||| ||| | ||| ||||||||||||  ||||| ||  |||||||| | ||||||||||||| | |||| |||||||||||     
T  10686699 cttctgaaggaatgtcactatcagactaagactagtacaatttgtattcttctgaccacgtgtagaaacaaacaaagaaattcaagggcaaagagaatgc 10686600  T
Q  829 aacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatcca 885  Q
    ||   ||||||  |||| ||||||| ||  ||||||||| ||||||| ||| |||||||    
T  10686599 aatgaatcattcaattagaagcaaaagaatttcgaatgactactcaatgacattatcca 10686541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 695 - 890
Target Start/End: Complemental strand, 20648895 - 20648699
Alignment:
Q  695 gtcaacagctgaagactttgacctaacttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtata 794  Q
    ||||||||||||||||| |||  ||  |||||||||||||||| || |||  ||| ||| ||||||||||| ||||||  ||||| ||  |||||  | |    
T  20648895 gtcaacagctgaagactctgat-tagtttgtcgtcttctgaagaaaggtcattatcagactcagagtagtataatttgtattcttctgaccacgtacaaa 20648797  T
Q  795 tacaaacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    |||||||||||||| | ||  |  |||||||||||||| |||||| ||||  |||||||| |  ||||||||| ||||||||||| ||  ||||||||    
T  20648796 tacaaacaaagaaattcaaatatcaagagaatgtaacaaatcattctatttaaagcaaagaaatttcgaatgactactcaacgacattgaccatttga 20648699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 796 - 890
Target Start/End: Original strand, 24097484 - 24097581
Alignment:
Q  796 acaaacaaagaaaattaa-ggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    ||||||||| |||||||| |||||| |||||||||| |||||||| ||||| |||||||  |  || |||||| ||||||||||| ||||||||||||    
T  24097484 acaaacaaaaaaaattaaaggacaacgagaatgtaatatatcattctattagaagcaaataaattttgaatgactactcaacgacattatccatttga 24097581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 389 - 458
Target Start/End: Original strand, 9828932 - 9829001
Alignment:
Q  389 tgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataatt 458  Q
    |||| ||| |||||||||||| ||||||| | |||||||||||| |||| ||||||||||||||| ||||    
T  9828932 tgtttaaccaaaatgagttttgaacaatgtccctaaagttttgatgataacaatgtataaaagaacaatt 9829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 723 - 892
Target Start/End: Complemental strand, 47597637 - 47597466
Alignment:
Q  723 tgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaaga 822  Q
    ||||||||||| |||||||||| | || | | | |||||||||||||||| |||||  |   |||| ||  | ||||||||||||| | || ||||||||    
T  47597637 tgtcgtcttctaaaggaatgtcacaatcaaacttagagtagtacaatttgtcttctactaaccacgcgttgaaacaaacaaagaaattcaaagacaaaga 47597538  T
Q  823 gaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttgaag 892  Q
    |||||||    ||||||  |||  ||||||||||  ||||||||| ||||||| ||||||| ||||||||||    
T  47597537 gaatgtagtgaatcattccatttgaagcaaaggaatttcgaatgactactcaatgacgttaaccatttgaag 47597466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 853
Target Start/End: Original strand, 20102326 - 20102457
Alignment:
Q  722 ttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaag 821  Q
    |||||||||| |||||||||||| ||||  || || ||||||| || ||||  |||||||   |||||||| | ||||||||| ||| | || |||||||    
T  20102326 ttgtcgtcttttgaaggaatgtcactatctgactctgagtagtgcattttgtgttctttttaccacgtgtagaaacaaacaaacaaattcaaagacaaag 20102425  T
Q  822 agaatgtaacatatcattatattataagcaaa 853  Q
    | |||| |||| |||||| ||||  |||||||    
T  20102426 acaatgcaacaaatcattctatttgaagcaaa 20102457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 615
Target Start/End: Complemental strand, 27686103 - 27686028
Alignment:
Q  540 agactttgaacgcataagaaataatctaaagcaaaagagaaacttatatgacttcgatcaaaatctgaataaaggt 615  Q
    ||||||| |||||||||| ||  |||| ||||||||||||| |||||| ||||| || ||| ||||||| ||||||    
T  27686103 agactttaaacgcataaggaagcatctgaagcaaaagagaatcttataagacttggaacaagatctgaagaaaggt 27686028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 398 - 432
Target Start/End: Original strand, 7913778 - 7913812
Alignment:
Q  398 aaaatgagttttaaacaatggctctaaagttttga 432  Q
    ||||||||||||||||||||||||| |||||||||    
T  7913778 aaaatgagttttaaacaatggctcttaagttttga 7913812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 761 - 827
Target Start/End: Complemental strand, 17119128 - 17119062
Alignment:
Q  761 tagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatg 827  Q
    |||||||||||| |||||| || |||||| || | ||||||||||||  | ||||||||||||||||    
T  17119128 tagtacaatttgtcttcttctgatcacgtatagaaacaaacaaagaacttcaaggacaaagagaatg 17119062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 414 - 459
Target Start/End: Complemental strand, 2906581 - 2906536
Alignment:
Q  414 aatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    |||| |||||||||||||| |||| ||||||||| |||||||||||    
T  2906581 aatgtctctaaagttttgatgataacaatgtatagaagaataattg 2906536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 683 - 772
Target Start/End: Complemental strand, 14519915 - 14519828
Alignment:
Q  683 tctgaaggtgatgtcaacagctgaagactttgacctaacttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttg 772  Q
    ||||||||||||||||  ||||||||||||||| |||  ||||||||||||||||||||||  | || ||| ||||||||||| ||||||    
T  14519915 tctgaaggtgatgtcagaagctgaagactttgaactagtttgtcgtcttctgaaggaatgt--caatcagactcagagtagtagaatttg 14519828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 522 - 631
Target Start/End: Complemental strand, 25517730 - 25517618
Alignment:
Q  522 ttttagttttgaaacatca-gactttgaacgcataagaaataatctaaagcaaaagagaaacttatatgacttcgatcaaaa--tctgaataaaggtcaa 618  Q
    |||||||| |||||||||| |||||||||| ||||||| |  |||| ||||||||||||| |||||| |||||  | ||| |  | |||| |||||| ||    
T  25517730 ttttagttctgaaacatcaagactttgaacacataagataacatctgaagcaaaagagaagcttatacgacttgaaacaagatttttgaagaaaggtaaa 25517631  T
Q  619 ccagaaagtcaac 631  Q
    |||||||||||||    
T  25517630 ccagaaagtcaac 25517618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 563 - 631
Target Start/End: Complemental strand, 14520064 - 14519996
Alignment:
Q  563 atctaaagcaaaagagaaacttatatgacttcgatcaaaatctgaataaaggtcaaccagaaagtcaac 631  Q
    |||| ||||| |||||||||||||| ||||| || ||| ||||||| |||| ||||||| |||||||||    
T  14520064 atctgaagcagaagagaaacttataagacttagaacaagatctgaagaaagatcaaccataaagtcaac 14519996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 387 - 458
Target Start/End: Original strand, 1615984 - 1616055
Alignment:
Q  387 tttgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataatt 458  Q
    |||||||||| |||||||||||| |||||||  ||| |||||||||  ||| ||| ||||||||||| ||||    
T  1615984 tttgttgaaccaaaatgagttttgaacaatgcatctgaagttttgataataacaaagtataaaagaacaatt 1616055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 387 - 450
Target Start/End: Original strand, 34061950 - 34062013
Alignment:
Q  387 tttgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaa 450  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||| |||| ||| ||||||||    
T  34061950 tttgttgaactaaaatgagttttatacaatgcctctaaggttttgatgataacaaagtataaaa 34062013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 548 - 630
Target Start/End: Complemental strand, 27138490 - 27138408
Alignment:
Q  548 aacgcataagaaataatctaaagcaaaagagaaacttatatgacttcgatcaaaatctgaataaaggtcaaccagaaagtcaa 630  Q
    |||||||||||||  |||| |||||||||| || ||  |||||||| || ||| ||||||| |||||||||||||||||||||    
T  27138490 aacgcataagaaagcatctgaagcaaaagaaaatctcgtatgacttggaacaagatctgaagaaaggtcaaccagaaagtcaa 27138408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 812 - 890
Target Start/End: Complemental strand, 30214292 - 30214212
Alignment:
Q  812 aaggacaaagagaatgtaacatatcattatattataagcaaaggatt--cgaatgagtactcaacgacgttatccatttga 890  Q
    ||||| ||||||||||||||| |||||| ||||| || |||| ||||  ||||||| ||||||||||| ||||||||||||    
T  30214292 aaggataaagagaatgtaacagatcattctattaaaaacaaaagattttcgaatgactactcaacgacattatccatttga 30214212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 498 - 666
Target Start/End: Complemental strand, 5346085 - 5345917
Alignment:
Q  498 taaattccgactctcgaatgcaaattttagttttgaaacatcagactttgaacgcataagaaataatctaaagcaaaagagaaacttatatgacttcgat 597  Q
    ||||||| ||||||| ||  |||  ||||||| | |||||| ||||| ||| |  ||| ||||| |||| ||||||||||||| ||||||  |||| ||     
T  5346085 taaattctgactctcaaagtcaagatttagttctaaaacataagactctgagcatatatgaaatcatctgaagcaaaagagaagcttataaaacttggaa 5345986  T
Q  598 caaaatctgaataaaggtcaaccagaaagtcaacgcttagatcataagatatttttctctaataagcat 666  Q
    ||| || |||| |||| ||||| |||||||||||| |  ||||| ||||| ||||||||| | ||||||    
T  5345985 caagatttgaagaaagatcaactagaaagtcaacgttatgatcagaagatgtttttctctcagaagcat 5345917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 19342153 - 19342224
Alignment:
Q  389 tgttgaactaaaatgagtttta-aacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    |||||||| ||| ||||||||| ||||||| |||||||||||||| |||| |||||||| |||||| |||||    
T  19342153 tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattg 19342224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 389 - 459
Target Start/End: Original strand, 19371651 - 19371722
Alignment:
Q  389 tgttgaactaaaatgagtttta-aacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    |||||||| ||| ||||||||| ||||||| |||||||||||||| |||| |||||||| |||||| |||||    
T  19371651 tgttgaaccaaagtgagttttagaacaatgtctctaaagttttgatgataacaatgtatgaaagaacaattg 19371722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 785 - 854
Target Start/End: Original strand, 10329718 - 10329787
Alignment:
Q  785 cacgtgtatatacaaacaaagaaaatt-aaggacaaagagaatgtaacatatcattatattataagcaaag 854  Q
    |||||| ||| |||||||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||||    
T  10329718 cacgtgcataaacaaacaa-gaaaattcaaggacaaagagaatgtaatatatcattctattagaagcaaag 10329787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 388 - 458
Target Start/End: Original strand, 17871979 - 17872046
Alignment:
Q  388 ttgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataatt 458  Q
    ||||||||||||||||||||||  |||||| ||   ||||||||| |||| ||||||||||||||| ||||    
T  17871979 ttgttgaactaaaatgagttttgtacaatgcct---aagttttgatgataacaatgtataaaagaacaatt 17872046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 722 - 779
Target Start/End: Complemental strand, 5345829 - 5345773
Alignment:
Q  722 ttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttctt 779  Q
    |||||||||||||||| |||||| ||| || | |||||||||||||||||| ||||||    
T  5345829 ttgtcgtcttctgaag-aatgtcactactaaactcagagtagtacaatttgtcttctt 5345773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 398 - 459
Target Start/End: Original strand, 29092575 - 29092636
Alignment:
Q  398 aaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    ||||||||||||  |||||| || |||||||||||| ||| ||| ||||||||||| |||||    
T  29092575 aaaatgagttttgtacaatgtctttaaagttttgacaataacaacgtataaaagaacaattg 29092636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 761 - 843
Target Start/End: Original strand, 39227739 - 39227821
Alignment:
Q  761 tagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatgtaacatatcattatat 843  Q
    ||||||||||||  ||||| ||  |||||| | | | |||||||||||||||| ||||| |||||||||||||||||||||||    
T  39227739 tagtacaatttgttttcttctgaccacgtgcagaaataaacaaagaaaattaaagacaaggagaatgtaacatatcattatat 39227821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 388 - 459
Target Start/End: Original strand, 7144558 - 7144629
Alignment:
Q  388 ttgttgaactaaaatgagttttaaacaatggctctaaagttttgacgataccaatgtataaaagaataattg 459  Q
    ||||| ||| |||||||||||||||||||| |||| ||||||||| || | |||| ||| |||||| |||||    
T  7144558 ttgttaaaccaaaatgagttttaaacaatgactctgaagttttgatgagaacaatatatgaaagaacaattg 7144629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 796 - 890
Target Start/End: Original strand, 19196957 - 19197053
Alignment:
Q  796 acaaacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaacgacgttatccatttga 890  Q
    ||||||||||||| | || |||||||| ||| |||||  ||||| ||||| |||||||| |  ||| ||||| ||||||||||| ||||| ||||||    
T  19196957 acaaacaaagaaattcaatgacaaagaaaatataacaagtcattttattagaagcaaagtaatttcaaatgactactcaacgacattatctatttga 19197053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 695 - 831
Target Start/End: Original strand, 6659 - 6796
Alignment:
Q  695 gtcaacagctgaagactttgacctaacttgtcgtcttctgaaggaatgtcgctattagaatcagagtagtacaatttgccttcttttgttcacgtgtata 794  Q
    |||| |||||||||||| |||||    |||||||||| |||||||||||| |||| ||| |||| ||||||   |||| |||||  ||  |||||| |||    
T  6659 gtcagcagctgaagactctgaccagctttgtcgtcttttgaaggaatgtcactatcagactcagggtagtagtgtttgtcttctactgaccacgtgcata 6758  T
Q  795 tacaaacaaagaaaatt-aaggacaaagagaatgtaac 831  Q
     ||||||||| |||||| ||||| || |||||||||||    
T  6759 aacaaacaaaaaaaattcaaggataaggagaatgtaac 6796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 777 - 890
Target Start/End: Complemental strand, 35036423 - 35036309
Alignment:
Q  777 cttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga--ttcgaatgagtactcaac 874  Q
    |||||| ||||||| | | ||||||||||||| |||| | |||||| |||||||   ||||||  |||||||||||| ||   |||||||| ||||||||    
T  35036423 cttttgatcacgtgcaaaaacaaacaaagaaatttaaaggcaaagataatgtaatgaatcattcaattataagcaaatgaatatcgaatga-tactcaac 35036325  T
Q  875 gacgttatccatttga 890  Q
    ||| ||||||||||||    
T  35036324 gacattatccatttga 35036309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 384 - 437
Target Start/End: Complemental strand, 26892222 - 26892169
Alignment:
Q  384 gattttgttgaactaaaatgagttttaaacaatggctctaaagttttgacgata 437  Q
    ||||||||| ||| |||||||||||||||||||  |||| ||||||||| ||||    
T  26892222 gattttgttaaacaaaaatgagttttaaacaattactcttaagttttgatgata 26892169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 761 - 856
Target Start/End: Complemental strand, 22186130 - 22186035
Alignment:
Q  761 tagtacaatttgccttcttttgttcacgtgtatatacaaacaaagaaaattaaggacaaagagaatgtaacatatcattatattataagcaaagga 856  Q
    |||||||||||| |||||| ||   ||||| | | |||||||||| || | || ||||||||||||||||||| ||||| ||| | ||||||||||    
T  22186130 tagtacaatttgtcttcttctgacaacgtgcagaaacaaacaaaggaattcaaagacaaagagaatgtaacatgtcattttataagaagcaaagga 22186035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University