View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4938-Insertion-3 (Length: 530)
Name: NF4938-Insertion-3
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4938-Insertion-3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 50088268 - 50087746
Alignment:
| Q |
8 |
tatttcatgtcaaaaccacgcacaatctacctcgttgactatgcttgtttcaaaccacctgttacatgtcgtgtcccttttgctactttcatggaacatt |
107 |
Q |
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| T |
50088268 |
tatttcatgtcaaaaccacgcacaatctacctcgttgactatgcttgtttcaaaccacctgttacatgtcgtgtcccttttgctactttcatggaacatt |
50088169 |
T |
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| Q |
108 |
caagactcatccttaaaaacaatccaaaaagtgtcgagtttcaaatgaggattcttgaacgttctggtcttggtgaagaaacatgtttaccaccttcaat |
207 |
Q |
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| T |
50088168 |
caagactcatccttaaaaacaatccaaaaagtgtcgagtttcaaatgaggattcttgaacgttctggtcttggtgaagaaacatgtttaccaccttcaat |
50088069 |
T |
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| Q |
208 |
tcattatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttctcagccatggattctttgtttgaaaaaaccggtctt |
307 |
Q |
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| T |
50088068 |
tcattatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttctcagccatggattctttgtttgaaaaaaccggtctt |
50087969 |
T |
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| Q |
308 |
aaaccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgtctgctatggtgattaacaaatacaaactaagaagca |
407 |
Q |
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| T |
50087968 |
aaaccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgtctgctatggtgattaacaaatacaaactaagaagca |
50087869 |
T |
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| Q |
408 |
atatcagaagttttaatctttctggaatggggtgtagtgctggactcatttcgatagatttagctcgtgatcttcttcaagttcatccaaattcaaatgc |
507 |
Q |
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| T |
50087868 |
atatcagaagtttcaatctttctggaatggggtgtagtgctggactcatttcgatagatttagctcgtgatcttcttcaagttcatccaaattcaaatgc |
50087769 |
T |
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| Q |
508 |
tattgttgttagcacagagatta |
530 |
Q |
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| T |
50087768 |
tgttgttgttagcacagagatta |
50087746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 9e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 11 - 525
Target Start/End: Complemental strand, 23272526 - 23272012
Alignment:
| Q |
11 |
ttcatgtcaaaaccacgcacaatctacctcgttgactatgcttgtttcaaaccacctgttacatgtcgtgtcccttttgctactttcatggaacattcaa |
110 |
Q |
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| T |
23272526 |
ttcatgttaaagccacgcacaatctacctagtcgattatgcctgcttcaaaccgccgattacttgtcgtgtccctttcgctactttcatggaacactcaa |
23272427 |
T |
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| Q |
111 |
gactcatccttaaaaacaatccaaaaagtgtcgagtttcaaatgaggattcttgaacgttctggtcttggtgaagaaacatgtttaccaccttcaattca |
210 |
Q |
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| T |
23272426 |
gactaatcctcaagaacaacccgaaaagtgtcgagttccaaatgaggattctcgaacgatctggtcttggcgaagaaacatgtttgccaccagcaataca |
23272327 |
T |
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| Q |
211 |
ttatattccaccaaaaccaaccatggaatcagcaagaggtgaagctgaacttgttattttctcagccatggattctttgtttgaaaaaaccggtcttaaa |
310 |
Q |
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| T |
23272326 |
ttacatcccacctaaaccaacaatggaagaagcaagacgcgaagccgagcttgttattttctcatccatggataccttatttgcgaagaccggactcaaa |
23272227 |
T |
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| Q |
311 |
ccaaaagacatagacatactcatagtaaattgtagcttgttttctccaacaccttctttgtctgctatggtgattaacaaatacaaactaagaagcaata |
410 |
Q |
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| T |
23272226 |
cctaaggacatagacattcttatagtcaattgcagcctcttttctccaactccttctttgtctgctatggtaatcaacaaatacaaacttagaagcaaca |
23272127 |
T |
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| Q |
411 |
tcagaagttttaatctttctggaatggggtgtagtgctggactcatttcgatagatttagctcgtgatcttcttcaagttcatccaaattcaaatgctat |
510 |
Q |
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| T |
23272126 |
tcaagagcttcaacctctccggaatgggatgcagcgcaggtttaatctccatcgatttagctcgcgatcttcttcaggtttatccgaattcaaacgcagt |
23272027 |
T |
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| Q |
511 |
tgttgttagcacaga |
525 |
Q |
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| T |
23272026 |
tgttgtgagcacaga |
23272012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 26452579 - 26452608
Alignment:
| Q |
157 |
gattcttgaacgttctggtcttggtgaaga |
186 |
Q |
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| T |
26452579 |
gattcttgaacgttctggtcttggtgaaga |
26452608 |
T |
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