View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4938-Insertion-4 (Length: 258)
Name: NF4938-Insertion-4
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4938-Insertion-4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 54943128 - 54942877
Alignment:
| Q |
8 |
caaccaagaagtaaatcttgatcgaaaactattcaactcaaaaatcaaaattatgctctttcgacccatttatcttttggtgggatccacaaaccacctt |
107 |
Q |
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| T |
54943128 |
caaccaaaaagtaaatcttgatcgaaaattattcaacttaaaaatcaaaattatgctctttcgacccatttgtctttttgtgggatccacaaaccacttt |
54943029 |
T |
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| Q |
108 |
ataatcattctatatat--ttttgacataaatattgttctatttagtaagatcttatacttgagttcataaaataaataatgtattatattagattcttg |
205 |
Q |
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| T |
54943028 |
ataatcattctatatatttttttgacacaaatattgttc-atttagtaagatcttatacttgagttgataaaataaataatgtattataaaagattcttt |
54942930 |
T |
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| Q |
206 |
cgacccatttgtcttttgatggaatccactaaccactttataatcattctata |
258 |
Q |
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| T |
54942929 |
cgacccatttgtcttttgatgaaatccactaaccactttataatcattctata |
54942877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 64 - 194
Target Start/End: Complemental strand, 54942934 - 54942803
Alignment:
| Q |
64 |
tctttcgacccatttatcttttggtgggatccacaaaccaccttataatcattctatatattttt-gacataaatattgttctatttagtaagatcttat |
162 |
Q |
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||||||||||||||| ||||||| || |||||| |||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
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| T |
54942934 |
tctttcgacccatttgtcttttgatgaaatccactaaccactttataatcattctatatttttttcgacacaaatattgttctatttagtaagatcttat |
54942835 |
T |
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| Q |
163 |
acttgagttcataaaataaataatgtattata |
194 |
Q |
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| T |
54942834 |
acttgagttcataaaataaataatgtattata |
54942803 |
T |
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