View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4938_high_1 (Length: 487)
Name: NF4938_high_1
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4938_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 484
Target Start/End: Original strand, 47624401 - 47624879
Alignment:
| Q |
6 |
accttcccatgcaacctgcccgtaagactcttgaccagtcacataagcagaaatcaacgaacaatatgccaacagctagtgagtgctcgattgtttcaca |
105 |
Q |
| |
|
||||||||| ||||||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47624401 |
accttcccaggcaacctgcacttaagacacttgaacagtcacataagcagaaatcaacgaacaatatgccaacagctagtgagtgctcgattgtttcaca |
47624500 |
T |
|
| Q |
106 |
tttttctttgcttacnnnnnnnnntaacaagtgagtgcactattcatcggtcttcaaatgttaatcaagctttgttaagccgctttatgtttgtcacata |
205 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
47624501 |
cttttctttgcttacaaaaaaaaataacaagtgagtgctctattcatcggtcttcaaatgttaatcaagctttgttaagctgctttatgtttgtcacata |
47624600 |
T |
|
| Q |
206 |
aaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgcagtaactgatatatggtacctgtgtggcaatctgaact |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47624601 |
aaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataatgcagtaactgatatatggtacctgtgtggcaatctgaact |
47624700 |
T |
|
| Q |
306 |
tgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgcttgtttttcaaagcatgggacccgagcattcgaataaacc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47624701 |
tgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgcttgtttttcaaagcatgggacccgagcattcgaataaacc |
47624800 |
T |
|
| Q |
406 |
atccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattgagtaattttatcttcat |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47624801 |
atccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccattgagcaattttatcttcat |
47624879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University