View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4938_high_2 (Length: 467)
Name: NF4938_high_2
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4938_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 43862068 - 43862502
Alignment:
| Q |
17 |
agggaaagggtatgatccctctgacgatgatgatgacgacgacggagatgacgacattggaggtagaaatgttaatgatgttgcaggtagaaattaatta |
116 |
Q |
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| T |
43862068 |
agggaaagggtatgatccctctgacgacgatgatgatgacgaggacgatgac---attggaggtagaaatgttaatgatgttgcaggtagaaattaatta |
43862164 |
T |
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| Q |
117 |
acaatattatgatccttgtacttgaaaaacattctttagatgtcatggaatttagcatggatcgatgaaaattaatttgaataatgttgattgtactttt |
216 |
Q |
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| T |
43862165 |
acaatattatgatccttgtacttaaaaaacattctttagatgtcatggaatt-agcatggatcgatgaaaattaatttgaataatgttgattgtactttt |
43862263 |
T |
|
| Q |
217 |
gcagtttgatgaaactagcttgctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaagattttaatttgtttggca |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43862264 |
gcagtttgatgaaactagctagctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaagattttaatttgtttggca |
43862363 |
T |
|
| Q |
317 |
tgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaattttagnnnnnnnnnnaatattt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43862364 |
tgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaattttagttttttttttaatattt |
43862463 |
T |
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| Q |
417 |
ttaaatataataaaaaatagctggacttgcgtgtgatga |
455 |
Q |
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| T |
43862464 |
ttaaatataataaaaaatagctggacttgcgtgtgatga |
43862502 |
T |
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