View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4938_high_7 (Length: 238)

Name: NF4938_high_7
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4938_high_7
NF4938_high_7
[»] chr4 (16 HSPs)
chr4 (1-159)||(23424286-23424446)
chr4 (63-150)||(38579257-38579344)
chr4 (63-150)||(44277236-44277323)
chr4 (82-154)||(24636877-24636949)
chr4 (88-154)||(56084678-56084744)
chr4 (63-143)||(12294685-12294765)
chr4 (63-151)||(38004470-38004558)
chr4 (62-153)||(12291275-12291368)
chr4 (75-160)||(33997630-33997716)
chr4 (89-154)||(24535380-24535445)
chr4 (74-147)||(53354034-53354107)
chr4 (63-153)||(24911357-24911448)
chr4 (74-162)||(9625472-9625561)
chr4 (63-133)||(4815945-4816012)
chr4 (77-133)||(23981950-23982005)
chr4 (88-159)||(26492460-26492532)
[»] chr5 (16 HSPs)
chr5 (75-154)||(7734071-7734150)
chr5 (63-154)||(27175236-27175327)
chr5 (88-154)||(41613469-41613535)
chr5 (63-154)||(1584517-1584608)
chr5 (74-149)||(39178047-39178122)
chr5 (63-150)||(42422580-42422667)
chr5 (89-153)||(1592311-1592374)
chr5 (74-153)||(11487142-11487221)
chr5 (74-151)||(39585116-39585191)
chr5 (63-116)||(9666227-9666280)
chr5 (74-130)||(1592179-1592235)
chr5 (63-147)||(42332054-42332138)
chr5 (81-156)||(43008309-43008384)
chr5 (74-120)||(12981690-12981736)
chr5 (74-120)||(13054971-13055017)
chr5 (74-154)||(9051091-9051171)
[»] chr2 (20 HSPs)
chr2 (63-154)||(27591164-27591255)
chr2 (63-154)||(44856811-44856902)
chr2 (63-149)||(20111054-20111139)
chr2 (75-139)||(44104037-44104102)
chr2 (64-120)||(40026411-40026467)
chr2 (74-153)||(11550034-11550113)
chr2 (88-154)||(34983852-34983918)
chr2 (64-145)||(150454-150534)
chr2 (63-110)||(129739-129786)
chr2 (63-114)||(10314477-10314528)
chr2 (74-133)||(11538452-11538511)
chr2 (63-150)||(33201680-33201767)
chr2 (63-133)||(4552373-4552443)
chr2 (74-159)||(41385244-41385330)
chr2 (75-116)||(9045154-9045195)
chr2 (75-116)||(21384606-21384647)
chr2 (63-116)||(37110230-37110283)
chr2 (90-150)||(4552456-4552516)
chr2 (80-151)||(31525341-31525413)
chr2 (81-125)||(35226108-35226152)
[»] chr1 (20 HSPs)
chr1 (63-153)||(43020812-43020902)
chr1 (63-152)||(3086005-3086095)
chr1 (63-154)||(15716917-15717008)
chr1 (63-133)||(3156145-3156215)
chr1 (96-153)||(4968546-4968603)
chr1 (88-153)||(45478968-45479033)
chr1 (62-150)||(4653715-4653803)
chr1 (74-154)||(26768089-26768169)
chr1 (99-154)||(8454140-8454195)
chr1 (62-116)||(11067041-11067095)
chr1 (88-154)||(38340198-38340264)
chr1 (88-159)||(25789060-25789132)
chr1 (76-116)||(34342387-34342427)
chr1 (107-161)||(40287921-40287976)
chr1 (62-116)||(12009669-12009723)
chr1 (79-124)||(8050257-8050302)
chr1 (83-159)||(13188012-13188089)
chr1 (75-159)||(40368099-40368184)
chr1 (63-112)||(47401437-47401486)
chr1 (74-154)||(29688965-29689045)
[»] chr7 (22 HSPs)
chr7 (74-154)||(33797267-33797347)
chr7 (63-149)||(43140593-43140678)
chr7 (63-154)||(38636247-38636338)
chr7 (63-154)||(13638322-13638413)
chr7 (63-133)||(13640993-13641063)
chr7 (74-124)||(13703084-13703134)
chr7 (63-113)||(13703374-13703424)
chr7 (63-153)||(29357067-29357157)
chr7 (63-133)||(35093660-35093730)
chr7 (63-133)||(35096908-35096978)
chr7 (63-152)||(38151535-38151624)
chr7 (74-154)||(7806837-7806917)
chr7 (89-156)||(39436810-39436877)
chr7 (64-138)||(6025346-6025420)
chr7 (74-154)||(2475494-2475574)
chr7 (74-114)||(14625042-14625082)
chr7 (64-116)||(39618333-39618385)
chr7 (73-111)||(14625211-14625249)
chr7 (62-156)||(19346425-19346519)
chr7 (63-133)||(35070872-35070942)
chr7 (79-159)||(35365033-35365114)
chr7 (89-133)||(32349357-32349401)
[»] chr6 (7 HSPs)
chr6 (63-154)||(22793203-22793294)
chr6 (83-154)||(23659328-23659399)
chr6 (74-133)||(2536495-2536554)
chr6 (62-159)||(3533286-3533382)
chr6 (63-146)||(11573442-11573525)
chr6 (88-154)||(7914488-7914554)
chr6 (63-147)||(8174455-8174538)
[»] chr3 (23 HSPs)
chr3 (63-154)||(7137339-7137430)
chr3 (88-154)||(15663711-15663776)
chr3 (63-154)||(29541635-29541726)
chr3 (63-149)||(21153234-21153319)
chr3 (63-116)||(38869959-38870012)
chr3 (63-154)||(4846450-4846541)
chr3 (74-145)||(35368404-35368475)
chr3 (65-150)||(7982705-7982790)
chr3 (89-154)||(49758003-49758068)
chr3 (74-114)||(14771202-14771242)
chr3 (63-147)||(17037880-17037963)
chr3 (74-157)||(37681425-37681509)
chr3 (74-154)||(46530306-46530386)
chr3 (63-154)||(4862295-4862386)
chr3 (79-159)||(5846333-5846415)
chr3 (74-116)||(19578760-19578802)
chr3 (88-154)||(21960353-21960419)
chr3 (63-116)||(4857314-4857367)
chr3 (63-116)||(4879042-4879095)
chr3 (61-114)||(45651282-45651334)
chr3 (63-151)||(2699414-2699502)
chr3 (74-150)||(17035309-17035385)
chr3 (108-159)||(34796058-34796110)
[»] scaffold0025 (1 HSPs)
scaffold0025 (63-153)||(11736-11825)
[»] chr8 (14 HSPs)
chr8 (63-153)||(11876340-11876430)
chr8 (63-153)||(11891347-11891437)
chr8 (63-144)||(15899144-15899225)
chr8 (74-158)||(29038229-29038314)
chr8 (63-155)||(9014844-9014936)
chr8 (83-133)||(2442479-2442530)
chr8 (78-145)||(7975815-7975882)
chr8 (77-138)||(2442325-2442387)
chr8 (88-154)||(8889602-8889668)
chr8 (63-153)||(12701581-12701671)
chr8 (63-117)||(19341909-19341963)
chr8 (74-124)||(37117879-37117929)
chr8 (83-154)||(4579038-4579107)
chr8 (57-122)||(11912073-11912142)
[»] scaffold0013 (1 HSPs)
scaffold0013 (63-147)||(97079-97163)
[»] scaffold0018 (1 HSPs)
scaffold0018 (74-154)||(36869-36949)
[»] scaffold0003 (1 HSPs)
scaffold0003 (74-116)||(226344-226386)


Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 23424446 - 23424286
Alignment:
Q  1 tgattaaaatttcttttgaatgttaattaccaaa-taccccctttaatcttgtacacaagaatttatattatatttgtcattgaaaatgataaatatgat 99  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23424446 tgattaaaatttcttttgaatgttaattaccaaaatacccccttcaatcttgtacacaagaatttatattatatttgtcattgaaaatgataaatatgat 23424347  T
Q  100 ttgttgagtttgttacaatttaaaa-tcataaatacctatatttataattttaatcaaaat 159  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23424346 ttgttgagtttgttacaatttaaaagtcataaatacctatatttataattttaatcaaaat 23424286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 38579257 - 38579344
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    ||||||||| ||||||||||||||  ||||||||| ||||||||||||| |||| || ||||||| ||||| ||||| ||||||||||    
T  38579257 ttatattatttttgtcattgaaaaatataaatatggtttgttgagtttgctacatttgaaaatcacaaatatctatacttataatttt 38579344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 44277323 - 44277236
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    |||||||||  |||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| ||||| ||||||||||||||||    
T  44277323 ttatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttaaaagtcacaaatatctatatttataatttt 44277236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 24636877 - 24636949
Alignment:
Q  82 gaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||| |||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| ||||||||||||||    
T  24636877 gaaaaagataaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataattttaatc 24636949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 56084744 - 56084678
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| ||||||||||||||| || || ||||||| ||||| ||||| ||||||||||||||    
T  56084744 gataaatatggtttgttgagtttgttccatttgaaaatcacaaatatctatacttataattttaatc 56084678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 12294685 - 12294765
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatattta 143  Q
    |||||||||  || ||||||||||  ||||||||| |||||||||||||||||| || ||| ||| ||||| |||||||||    
T  12294685 ttatattattgttctcattgaaaaatataaatatggtttgttgagtttgttacatttgaaattcacaaatatctatattta 12294765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 38004470 - 38004558
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttta 151  Q
    |||||||||  ||||||||||||| |||||||||| |||||||| ||||||| | || ||| | | ||||| ||||| |||||||||||    
T  38004470 ttatattattgttgtcattgaaaaagataaatatggtttgttgaatttgttatatttaaaagtaacaaatatctatacttataatttta 38004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 153
Target Start/End: Complemental strand, 12291368 - 12291275
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacc--tatatttataattttaat 153  Q
    |||||| ||| ||||||||||||||  |||||||||  ||||||| ||||||||| || ||| ||| ||||| |  ||||||||||||||||||    
T  12291368 tttataatatttttgtcattgaaaaatataaatatggattgttgaatttgttacatttgaaagtcacaaatatctatatatttataattttaat 12291275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 160
Target Start/End: Complemental strand, 33997716 - 33997630
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaat-cataaatacctatatttataattttaatcaaaatt 160  Q
    |||||| ||||| |||||| ||||||| ||   ||| |||||||||||||| || ||||| |||||| |||||||||||||||||||    
T  33997716 tgtcatcgaaaaagataaacatgatttatttgatttattacaatttaaaattcacaaatatctatatgtataattttaatcaaaatt 33997630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 24535380 - 24535445
Alignment:
Q  89 ataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||||||||||||||||||||| |||| || |||  |||||||| ||| | ||||||||||||||    
T  24535380 ataaatatgatttgttgagtttgctacatttgaaatacataaatatctaaacttataattttaatc 24535445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 53354107 - 53354034
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataat 147  Q
    ||||||||||||| |||||||||| |||  |||||||||| || || ||| ||| ||||| |||||||||||||    
T  53354107 ttgtcattgaaaaagataaatatggttttgtgagtttgttgcatttgaaattcacaaatatctatatttataat 53354034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 24911357 - 24911448
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctatatttataattttaat 153  Q
    |||||||||  ||||||||||||| |||||  || |||||||| |||| ||||||||||||| ||| |||||  | || |||||||||||||    
T  24911357 ttatattattgttgtcattgaaaaagataagcataatttgttgggtttattacaatttaaaagtcacaaatatttgtacttataattttaat 24911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 9625472 - 9625561
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaaatttt 162  Q
    |||||||||| ||  ||||| ||||||| ||   ||||||||||||| ||||||| |||||  || | ||||||||||||||||||||||    
T  9625472 ttgtcattgataaaaataaacatgatttttttgatttgttacaatttgaaaatcacaaatatttacacttataattttaatcaaaatttt 9625561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 4815945 - 4816012
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  ||||||||||||| |||||||   ||||||||||||||||||| || ||| ||| |||||    
T  4815945 ttatattattgttgtcattgaaaaagataaat---atttgttgagtttgttacatttcaaagtcacaaata 4816012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 23981950 - 23982005
Alignment:
Q  77 tcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||| ||||| |||||||||| ||||||||||||||||| |||| |||||| |||||    
T  23981950 tcatcgaaaaagataaatatggtttgttgagtttgttac-atttgaaatcacaaata 23982005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 26492460 - 26492532
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaa-tttaaaatcataaatacctatatttataattttaatcaaaat 159  Q
    |||||| ||||||| ||| ||||||||||| |||||| | | |||||  |||| |||||||||||||||||||    
T  26492460 gataaacatgattttttgggtttgttacaattttaaagttacaaatatatatacttataattttaatcaaaat 26492532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 154
Target Start/End: Complemental strand, 7734150 - 7734071
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||||||||||||||||  ||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  7734150 tgtcattgaaaatgataaatatggattgttgagtttgttacatttaaaaatcataaatatctatacttataattttaatc 7734071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 27175236 - 27175327
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  ||||||||||||| |||||||||| |||||||||||||||||| || ||| | ||||||| ||||| ||||||||||||||    
T  27175236 ttatattattattgtcattgaaaaagataaatatggtttgttgagtttgttacatttaaaattaataaatatctatacttataattttaatc 27175327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 41613469 - 41613535
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| |||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||    
T  41613469 gataaatatggtttgttgagtttgttacatttaaaaatcataaatatctatacttataattttaatc 41613535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 1584608 - 1584517
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  ||| |||||||||  |||| ||||||||||||||||||||||| || ||| |||  |||||||||| ||||||||||||||    
T  1584608 ttatattattgttgccattgaaaaatataactatgatttgttgagtttgttacatttgaaagtcactaatacctatacttataattttaatc 1584517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 39178122 - 39178047
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattt 149  Q
    ||||||||||||| |||||||||| ||||||  |||||||||| || ||||||| |||||| |||| |||||||||    
T  39178122 ttgtcattgaaaaagataaatatggtttgtttggtttgttacatttgaaaatcacaaatacatatacttataattt 39178047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 42422667 - 42422580
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    |||||||||  || |||||||||| ||||||| || ||||||||||||||||||||| ||| ||| ||||  ||||||||||| ||||    
T  42422667 ttatattattgttctcattgaaaaagataaatttggtttgttgagtttgttacaattgaaagtcacaaatgtctatatttatattttt 42422580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 1592311 - 1592374
Alignment:
Q  89 ataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    ||||||||| ||||||||||||||||| |||||||| || | ||||||||| |||||||||||||    
T  1592311 ataaatatggtttgttgagtttgttac-atttaaaaacacatatacctatacttataattttaat 1592374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 11487221 - 11487142
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    ||||||||||||| |||||||||| ||||||||||||  |||| || ||| | | ||||| ||||| |||||||||||||    
T  11487221 ttgtcattgaaaaagataaatatgctttgttgagtttagtacatttgaaagtaaaaaatatctatacttataattttaat 11487142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 39585116 - 39585191
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttta 151  Q
    |||||||||||||  | ||||||| |||||||||||||||||| || ||| ||| ||||| ||||| |||||||||||    
T  39585116 ttgtcattgaaaa--aaaaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataatttta 39585191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 9666227 - 9666280
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    |||||||||  ||||||||||||| |||||||||| ||| ||||||||||||||    
T  9666227 ttatattattgttgtcattgaaaaagataaatatggtttcttgagtttgttaca 9666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 1592179 - 1592235
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataa 130  Q
    |||| ||||||||  ||||||||| |||||||||||||||||| || ||||||||||    
T  1592179 ttgtaattgaaaaatataaatatggtttgttgagtttgttacatttgaaaatcataa 1592235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 42332054 - 42332138
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataat 147  Q
    ||||||||| ||||||||||||||    |||||||||||||||| ||||||||| || ||| ||| ||| | |||||||| ||||    
T  42332054 ttatattatttttgtcattgaaaaaacaaaatatgatttgttgaatttgttacatttaaaagtcaaaaaaatctatatttgtaat 42332138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 43008384 - 43008309
Alignment:
Q  81 tgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatcaa 156  Q
    |||||| ||||||||||||||||| ||||||||| | ||  || ||| ||||| ||||| || |||||||||||||    
T  43008384 tgaaaaagataaatatgatttgttaagtttgttatatttggaagtcacaaatatctatacttttaattttaatcaa 43008309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 12981690 - 12981736
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt 120  Q
    ||||||||||||| |||||||||||| |||| | |||||||||||||    
T  12981690 ttgtcattgaaaaggataaatatgatgtgttaaatttgttacaattt 12981736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 13054971 - 13055017
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt 120  Q
    ||||||||||||| |||||||||||| |||| | |||||||||||||    
T  13054971 ttgtcattgaaaaagataaatatgatgtgttaaatttgttacaattt 13055017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 9051091 - 9051171
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||||||  | ||||||||||||||||| || ||||| || ||| ||| |||||  |||| ||||||| ||||||    
T  9051091 ttgtcattgaaaaataaaaatatgatttgttgagattattacatttgaaagtcacaaatatatatacttataatcttaatc 9051171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 27591164 - 27591255
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  ||||||||||||| ||||||||||||||||||| ||||||||| || ||| ||| ||||| ||||| ||||||||||||||    
T  27591164 ttatattattgttgtcattgaaaaagataaatatgatttgttgaatttgttacatttgaaagtcacaaatatctatacttataattttaatc 27591255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 44856902 - 44856811
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||||||||   ||||||||||||||||||||||||||| || ||||||| ||||| ||||| ||||||||||||||    
T  44856902 ttatattattgttgtcattgaaaaatgtaaatatgatttgttgagtttgttacatttgaaaatcacaaatatctatacttataattttaatc 44856811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 20111054 - 20111139
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattt 149  Q
    |||||||||  ||||||||| |||  ||||||||| ||||||||||||||||| |||| |||||| ||||| |||||||||||||||    
T  20111054 ttatattattgttgtcattggaaaatataaatatggtttgttgagtttgttac-atttgaaatcacaaatatctatatttataattt 20111139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 44104102 - 44104037
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctata 139  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||| ||||||||| |||||    
T  44104102 tgtcattgaaaaagataaacatgatttgttgagtttgtttcaatttaaaagtcataaatatctata 44104037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 40026411 - 40026467
Alignment:
Q  64 tatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt 120  Q
    ||||||||  |||||||||||||| | ||||||||||||||||||||||||||||||    
T  40026411 tatattattgttgtcattgaaaattaaaaatatgatttgttgagtttgttacaattt 40026467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 11550034 - 11550113
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    ||||||||||||| |||||||||| || ||||||||||||||| || ||| ||| |||||  |||| || ||||||||||    
T  11550034 ttgtcattgaaaaagataaatatggttggttgagtttgttacatttgaaactcacaaatatttatacttctaattttaat 11550113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 34983852 - 34983918
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||||||  ||||||||||||||||||| || ||| ||| ||||| ||||| ||||||||||||||    
T  34983852 gataaatacaatttgttgagtttgttacatttaaaagtcacaaatatctatagttataattttaatc 34983918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 145
Target Start/End: Original strand, 150454 - 150534
Alignment:
Q  64 tatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttata 145  Q
    ||||||||  |||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| ||||| |||||| ||||    
T  150454 tatattattgttgtcattgaaaaa-ataaatatggtttgttgagtttgttacatttaaaagtcacaaatatctatatatata 150534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Complemental strand, 129786 - 129739
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagttt 110  Q
    |||||||||  |||| ||||||||||||||||||| ||||||||||||    
T  129786 ttatattattgttgttattgaaaatgataaatatggtttgttgagttt 129739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 10314477 - 10314528
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgtta 114  Q
    |||||||||| |||| |||||||| | ||||||||||||||||| |||||||    
T  10314477 ttatattatagttgttattgaaaaaggtaaatatgatttgttgaatttgtta 10314528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 11538452 - 11538511
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| |||||    
T  11538452 ttgtcattgaaaaaaataaatatggtttgttgagtttgttacatttgaaactcacaaata 11538511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 33201680 - 33201767
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    ||||||| | |||||||||||||| ||||| |||| |||||||| ||||||||| || ||| ||| ||| |  |||| ||||||||||    
T  33201680 ttatattgtttttgtcattgaaaaagataactatggtttgttgaatttgttacatttgaaagtcacaaacatttatacttataatttt 33201767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 4552373 - 4552443
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  |||||||||||||  ||||||||| ||| |||||||||||| | || ||| |||||||||    
T  4552373 ttatattattgttgtcattgaaaaatataaatatggtttattgagtttgttagatttgaaattcataaata 4552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Original strand, 41385244 - 41385330
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaaat 159  Q
    |||| |||||||| |||||| || |||| |||||||||||||| ||| ||| |||  ||||| || | |||||||||||||||||||    
T  41385244 ttgttattgaaaaagataaacataattttttgagtttgttacagtttgaaagtcacgaatacttacacttataattttaatcaaaat 41385330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 9045195 - 9045154
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||||||  ||||||||| ||||||||||||||||||    
T  9045195 tgtcattgaaaaatataaatatggtttgttgagtttgttaca 9045154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 21384647 - 21384606
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  21384647 tgtcattgaaaacgataaatatggtttattgagtttgttaca 21384606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 37110230 - 37110283
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||| ||||||||||||||| ||||||||  ||| || |||||||||||    
T  37110230 ttatattatttttgtcattgaaaattataaatatagtttcttaagtttgttaca 37110283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 150
Target Start/End: Original strand, 4552456 - 4552516
Alignment:
Q  90 taaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    |||||||| ||| |||||||||||||| || ||| ||||||||| ||| | ||||||||||    
T  4552456 taaatatggtttattgagtttgttacatttgaaattcataaatatctaaacttataatttt 4552516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 31525341 - 31525413
Alignment:
Q  80 ttgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataatttta 151  Q
    ||||||| |||||| ||| ||| ||||||||||||| |||| ||| |||||||||| | || |||||||||||    
T  31525341 ttgaaaaagataaacatggttttttgagtttgttacgatttgaaagtcataaatacttgtacttataatttta 31525413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 35226152 - 35226108
Alignment:
Q  81 tgaaaatgataaatatgatttgttgagtttgttacaatttaaaat 125  Q
    |||||| ||||||||||||||||||||||| ||| ||||| ||||    
T  35226152 tgaaaaagataaatatgatttgttgagtttattataatttgaaat 35226108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 43020812 - 43020902
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    ||||||||| |||||||||||||| |||||||||| |||||||||||||||| | || ||||||||||||| ||||  || ||||||||||    
T  43020812 ttatattatttttgtcattgaaaaagataaatatggtttgttgagtttgttagatttgaaaatcataaatatctatgcttgtaattttaat 43020902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Complemental strand, 3086095 - 3086005
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctata-tttataattttaa 152  Q
    |||||||||  ||||||||||||| |||||||||| ||| |||||||||||||| || ||| |||| |||| ||||| |||||||||||||    
T  3086095 ttatattattgttgtcattgaaaaagataaatatggtttattgagtttgttacatttgaaagtcatgaatatctatactttataattttaa 3086005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 15716917 - 15717008
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||| ||||||||||| ||| |||||||||||||||||| || ||| ||| |||||  | || ||||||||||||||    
T  15716917 ttatattattgttgtcattaaaaatgataaagatggtttgttgagtttgttacatttcaaagtcacaaatatatgtacttataattttaatc 15717008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 3156215 - 3156145
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| |||||    
T  3156215 ttatattatttttgtcattgaaaaacataaatatggtttgttgagtttgttacatttgaaagtcacaaata 3156145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 4968603 - 4968546
Alignment:
Q  96 tgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    ||||||||| ||||||||||| || ||||||| ||||||||||| |||||||||||||    
T  4968603 tgatttgttaagtttgttacatttgaaaatcacaaatacctatacttataattttaat 4968546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 45479033 - 45478968
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||| ||||| |||||||||||| || ||| ||| ||||| |||||||||||||||||||    
T  45479033 gataaatatggtttgtagagtttgttacatttgaaagtcacaaatatctatatttataattttaat 45478968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 4653803 - 4653715
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    ||||||||||  |||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| |||||  |||  ||||||||||    
T  4653803 tttatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttaaaagtcacaaatatttatccttataatttt 4653715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 26768169 - 26768089
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||| |||| |||||||||  |||||||| ||||||||| || ||| ||||||||| ||||| || |||||||||||    
T  26768169 ttgtcattaaaaaggataaatatagtttgttgaatttgttacatttgaaattcataaatatctatacttgtaattttaatc 26768089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 8454195 - 8454140
Alignment:
Q  99 tttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||||||||||| || ||| ||||||||| |||||||| |||||||||||    
T  8454195 tttgttgagtttgttacatttgaaagtcataaatatctatatttttaattttaatc 8454140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 11067095 - 11067041
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||||  |||||||||||||  |||||||||||||||| |||||||||||    
T  11067095 tttatattattattgtcattgaaaaatataaatatgatttgttaagtttgttaca 11067041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 38340198 - 38340264
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| || ||||||||||||||| || ||| ||||||||| ||||| ||| ||||||||||    
T  38340198 gataaatatggttcgttgagtttgttacatttgaaagtcataaatatctatacttaaaattttaatc 38340264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 25789060 - 25789132
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctatatttataattttaatcaaaat 159  Q
    |||||| |||||||||||  ||| ||||||||||||| ||||||| | ||||  |||||||||||||||||||    
T  25789060 gataaacatgatttgttggatttattacaatttaaaagtcataaagatctatgcttataattttaatcaaaat 25789132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 34342387 - 34342427
Alignment:
Q  76 gtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  34342387 gtcattgaaaaagataaatatgatttgttgagtttattaca 34342427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Complemental strand, 40287976 - 40287921
Alignment:
Q  107 gtttgttacaatttaaaa-tcataaatacctatatttataattttaatcaaaattt 161  Q
    |||||||||||||| ||| |||||||||  | ||||||||||||||||||||||||    
T  40287976 gtttgttacaatttgaaagtcataaatatttttatttataattttaatcaaaattt 40287921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 12009723 - 12009669
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||||| ||||||||||||| ||||||||||  ||| ||||| |||||||    
T  12009723 tttatattatagttgtcattgaaaaagataaatatggcttgatgagtatgttaca 12009669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 8050302 - 8050257
Alignment:
Q  79 attgaaaatgataaatatgatttgttgagtttgttacaatttaaaa 124  Q
    |||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  8050302 attgaaaaagataaacatgattttttgggtttgttacaatttaaaa 8050257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 13188089 - 13188012
Alignment:
Q  83 aaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctatatttataattttaatcaaaat 159  Q
    |||| |||||| ||| ||||||| ||||||| |||||||||| ||||| |||  | || |||||||||||||||||||    
T  13188089 aaaaagataaacatggtttgttgggtttgttgcaatttaaaaatcatagatatttgtacttataattttaatcaaaat 13188012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 40368099 - 40368184
Alignment:
Q  75 tgtcattgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaaat 159  Q
    |||||||||||| |||||| ||| ||||||| |||||||| ||||| ||| ||| ||| | |||||  |||| |||||||||||||    
T  40368099 tgtcattgaaaaagataaacatggtttgttgggtttgttataatttgaaagtcacaaacatctatacctatacttttaatcaaaat 40368184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 47401486 - 47401437
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgt 112  Q
    |||||||||  ||||||||||||| |||||||||| |||||| |||||||    
T  47401486 ttatattatcgttgtcattgaaaaagataaatatggtttgttaagtttgt 47401437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 29689045 - 29688965
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||||||  ||||||||| |||||| | ||||||||| || ||| ||| ||||| ||||| |||  |||||||||    
T  29689045 ttgtcattgaaaaatataaatatgttttgttaaatttgttacatttaaaattcacaaatatctatacttaatattttaatc 29688965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 33797267 - 33797347
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||| |||||| ||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || |||||||||||    
T  33797267 ttgtcactgaaaaagataaatatgatttgttgagtttgttacatttgaaaatcacaaatatctatacttttaattttaatc 33797347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 43140593 - 43140678
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattt 149  Q
    ||||||||| ||| |||||||||| |||||||||||||||| |||||||||||| || ||||||| ||||| ||||| |||||||||    
T  43140593 ttatattat-tttatcattgaaaaagataaatatgatttgtggagtttgttacatttgaaaatcacaaatatctatacttataattt 43140678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 38636338 - 38636247
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||||||||  |||||||||||||||||| ||||||||| || ||| ||| ||| | ||||| ||||||||||||||    
T  38636338 ttatattattgttgtcattgaaaaatataaatatgatttgttgaatttgttacatttgaaagtcacaaaaatctatacttataattttaatc 38636247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 13638413 - 13638322
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| ||||||||||||| |||||||||| |||||| |||| |||| | || ||| ||| |||||  |||| ||||||||||||||    
T  13638413 ttatattatagttgtcattgaaaaagataaatatggtttgtttagttcgttatatttgaaagtcacaaatatatatacttataattttaatc 13638322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Original strand, 13640993 - 13641063
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  ||||||||||||| |||| ||||| |||||||||||||||||| || ||||||| |||||    
T  13640993 ttatattattgttgtcattgaaaaagatagatatggtttgttgagtttgttacatttgaaaatcacaaata 13641063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 13703084 - 13703134
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaa 124  Q
    ||||||||| ||| |||||||||| ||||||||||||||||||||||||||    
T  13703084 ttgtcattgtaaaagataaatatggtttgttgagtttgttacaatttaaaa 13703134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 13703374 - 13703424
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgtt 113  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||    
T  13703374 ttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgtt 13703424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 29357157 - 29357067
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||  |||||| |||||| ||||| |||| |||||||||||||||||| || ||| ||| | ||| ||||| |||||||||||||    
T  29357157 ttatattattgttgtcactgaaaaagataagtatggtttgttgagtttgttacatttgaaagtcacacatatctatacttataattttaat 29357067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 35093730 - 35093660
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  ||||| ||||||  ||||||||||||||||||||||||||||| || ||| |||||||||    
T  35093730 ttatattattgttgtcgttgaaatagataaatatgatttgttgagtttgttacatttgaaagtcataaata 35093660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 35096978 - 35096908
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  ||||| ||||||  ||||||||||||||||||||||||||||| || ||| |||||||||    
T  35096978 ttatattattgttgtcgttgaaatagataaatatgatttgttgagtttgttacatttgaaagtcataaata 35096908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 38151535 - 38151624
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaa 152  Q
    |||||||||  |||| ||||||||  ||||||||  |||||||||||||||||| || ||| ||| ||||| ||||||||||| ||||||    
T  38151535 ttatattattgttgttattgaaaaatataaatatagtttgttgagtttgttacatttgaaagtcacaaatatctatatttatatttttaa 38151624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 7806837 - 7806917
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||||||||||| |||||||||| |||||||||||||||||  || ||| | | |||||  ||||||||||| |||||||    
T  7806837 ttgtcattgaaaaagataaatatggtttgttgagtttgttacttttgaaagttacaaatatttatatttataaatttaatc 7806917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Complemental strand, 39436877 - 39436810
Alignment:
Q  89 ataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatcaa 156  Q
    ||||||||| |||||||| ||||||| | || ||||||| |||||  |||||||||||||||||||||    
T  39436877 ataaatatggtttgttgaatttgttagatttgaaaatcacaaatatttatatttataattttaatcaa 39436810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 6025420 - 6025346
Alignment:
Q  64 tatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctat 138  Q
    ||||||||  |||||||||||||  ||||||||| |||||||||||||||||| || ||| ||| ||||| ||||    
T  6025420 tatattattgttgtcattgaaaaatataaatatggtttgttgagtttgttacatttgaaagtcacaaatagctat 6025346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 2475494 - 2475574
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||| |||||||  |||||||| ||||||||||||||||||| || ||| ||| || ||  |||| ||||||||||||||    
T  2475494 ttgtcgttgaaaaaaataaatataatttgttgagtttgttacatttgaaagtcacaactatttatacttataattttaatc 2475574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 14625082 - 14625042
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgtta 114  Q
    ||||||||||||| ||| |||||||||||||||||||||||    
T  14625082 ttgtcattgaaaaagattaatatgatttgttgagtttgtta 14625042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 39618333 - 39618385
Alignment:
Q  64 tatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||  |||||||||||||  |||||||||||||| |||||||||||||    
T  39618333 tatattattgttgtcattgaaaaatataaatatgatttgatgagtttgttaca 39618385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 111
Target Start/End: Original strand, 14625211 - 14625249
Alignment:
Q  73 tttgtcattgaaaatgataaatatgatttgttgagtttg 111  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  14625211 tttgtcattgaaaaagattaatatgatttgttgagtttg 14625249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 19346425 - 19346519
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatcaa 156  Q
    ||||||||||  || ||||||| ||  | ||||||| |||||||||||||||||| || ||| ||| |||||  |||| ||||||| ||||||||    
T  19346425 tttatattattgttttcattgacaaatagaaatatggtttgttgagtttgttacatttgaaagtcacaaatatatatacttataatattaatcaa 19346519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 133
Target Start/End: Complemental strand, 35070942 - 35070872
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||  ||||| ||||||  |||||||||| |||||||||||||||||| || ||  |||||||||    
T  35070942 ttatattattgttgtcgttgaaatagataaatatggtttgttgagtttgttacatttgaatgtcataaata 35070872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 35365033 - 35365114
Alignment:
Q  79 attgaaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctatatttataattttaatcaaaat 159  Q
    ||||||||  ||||| ||| ||| ||| |||||||||||||||||| ||| |||||  | || |||||||||||||||||||    
T  35365033 attgaaaaatataaacatggttttttgggtttgttacaatttaaaagtcacaaatatttgtacttataattttaatcaaaat 35365114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 32349357 - 32349401
Alignment:
Q  89 ataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    |||||||||||||| ||||||||||||| || ||||||| |||||    
T  32349357 ataaatatgatttgatgagtttgttacatttgaaaatcacaaata 32349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 22793294 - 22793203
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||||||||||||||||| |||||||||  |||||||||||||||||| || ||| ||| || ||  |||| ||||||||||||||    
T  22793294 ttatattatatttgtcattgaaaaagataaatattgtttgttgagtttgttacatttgaaagtcacaagtatttatacttataattttaatc 22793203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 23659328 - 23659399
Alignment:
Q  83 aaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||| |||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| ||||||||||||||    
T  23659328 aaaaagataaatatggtttgttgagtttgttacatttaaaagtcacaaatatctatacttataattttaatc 23659399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 2536554 - 2536495
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaata 133  Q
    ||||||||||||| |||||||||  |||||||||||||||||| |||||| ||| |||||    
T  2536554 ttgtcattgaaaaagataaatattgtttgttgagtttgttacattttaaagtcacaaata 2536495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 159
Target Start/End: Original strand, 3533286 - 3533382
Alignment:
Q  62 tttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaa-aatcataaatacctatatttataattttaatcaaaat 159  Q
    ||||||||||   |||||||| ||| |||||| ||||||||||||||||| |||||||||| | ||| |||||  | ||||||| ||||||||||||||    
T  3533286 tttatattattgatgtcattggaaaagataaacatgatttgttgagtttgatacaatttaatagtcaaaaata--tctatttatcattttaatcaaaat 3533382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 11573442 - 11573525
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataa 146  Q
    |||||||||  ||||| |||||||  |||||||| ||||||||||||||||||| || ||| ||| ||||| ||||| ||||||    
T  11573442 ttatattattgttgtcgttgaaaaatataaatataatttgttgagtttgttacatttaaaagtcacaaatatctatacttataa 11573525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 7914554 - 7914488
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| ||  ||||||||||    
T  7914554 gataaatatggtttgttgagtttgttacatttgaaagtcaaaaatatctatacttgaaattttaatc 7914488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 8174538 - 8174455
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataat 147  Q
    |||||||||  |||||||| ||||  ||||||||||||| || ||||||||||| || ||| ||| |||||  ||||||||||||    
T  8174538 ttatattattgttgtcatttaaaaatataaatatgattt-tttagtttgttacatttgaaagtcacaaatatatatatttataat 8174455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 7137430 - 7137339
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||| |||| |||||||||| |||||||||||||||| | || ||| ||||||||| ||||| ||||||||||||||    
T  7137430 ttatattattgttgtcattaaaaaagataaatatggtttgttgagtttgttatatttgaaagtcataaatatctatacttataattttaatc 7137339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 15663776 - 15663711
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| |||| |||||| ||||||||    
T  15663776 gataaatatgatttgttgagtttgttacatttaaaaatcataaatatctat-tttatatttttaatc 15663711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 29541726 - 29541635
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  ||||||||||| | |||||||||| ||||||||||| |||||| || ||| ||| |||||  |||| ||||||||||||||    
T  29541726 ttatattattgttgtcattgaataagataaatatggtttgttgagttcgttacatttgaaagtcacaaatatatatacttataattttaatc 29541635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 21153319 - 21153234
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattt 149  Q
    |||||||||  ||||||||| |||  ||||||||| ||| || ||||||||||| || ||||||||||||| |||||||||||||||    
T  21153319 ttatattattgttgtcattgtaaaaaataaatatggtttatt-agtttgttacatttgaaaatcataaatatctatatttataattt 21153234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 38869959 - 38870012
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  38869959 ttatattatttttgttattgaaaaagataaatatgatttattgagtttgttaca 38870012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 4846450 - 4846541
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  ||||||||||  | |||||||||| |||||||||||||||||| || ||| ||| | |||  |||| ||||||||||||||    
T  4846450 ttatattattgttgtcattgagtaagataaatatggtttgttgagtttgttacatttgaaagtcacatatatttatacttataattttaatc 4846541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 35368404 - 35368475
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttata 145  Q
    |||||||| |||| |||||||||| |||||||| ||||||||| || ||||| | ||||| |||||||||||    
T  35368404 ttgtcattaaaaaagataaatatggtttgttgaatttgttacatttgaaaattacaaatatctatatttata 35368475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 150
Target Start/End: Complemental strand, 7982790 - 7982705
Alignment:
Q  65 atattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    |||||||  |||||||||||||  ||||||||| |||||| ||||||||||| || ||| ||| ||||| ||||  ||||||||||    
T  7982790 atattattgttgtcattgaaaaatataaatatggtttgtttagtttgttacatttgaaagtcacaaatatctatgcttataatttt 7982705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 49758068 - 49758003
Alignment:
Q  89 ataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||| ||||||||||| ||||| || ||| ||| |||||| |||| ||||||||||||||    
T  49758068 ataaatatgaattgttgagtttattacatttgaaagtcacaaatacttatacttataattttaatc 49758003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 14771242 - 14771202
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgtta 114  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  14771242 ttgtcattgaaaatgataaatattgtttgttgagtttgtta 14771202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 147
Target Start/End: Complemental strand, 17037963 - 17037880
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataat 147  Q
    ||||||||| ||||||||||||||  ||||||||| |||||||| ||||||||| || ||| ||| |||||  |||| |||||||    
T  17037963 ttatattatttttgtcattgaaaa-aataaatatggtttgttgaatttgttacatttgaaagtcacaaatatttatacttataat 17037880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 157
Target Start/End: Original strand, 37681425 - 37681509
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaa 157  Q
    |||| |||||||| |||||| ||||||| ||| |||||||||||||| ||| ||| |||||  | || |||||||||||||||||    
T  37681425 ttgttattgaaaaagataaacatgattttttgggtttgttacaatttgaaagtcacaaatatttgtacttataattttaatcaaa 37681509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 46530306 - 46530386
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    ||||||||| ||| |||||||||| |||||| | ||||||| | || ||| ||| ||||| ||||| ||||||||||||||    
T  46530306 ttgtcattggaaaagataaatatggtttgttaactttgttatatttgaaagtcacaaatatctatacttataattttaatc 46530386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 4862295 - 4862386
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||||| || |||||||||| ||| |||||||||||||| || ||| ||| | |||  |||| || |||||||||||    
T  4862295 ttatattattgttgtcattgagaaagataaatatggtttattgagtttgttacatttgaaagtcacatatatttatacttgtaattttaatc 4862386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 5846333 - 5846415
Alignment:
Q  79 attgaaaatgataaatatga-tttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaaat 159  Q
    |||||||| ||||||||||| ||||||| |||| ||||||||| ||| ||| |||||  |||| || ||||||||||||||||    
T  5846333 attgaaaaagataaatatgattttgttgggtttattacaatttgaaagtcacaaatatttatacttgtaattttaatcaaaat 5846415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 19578760 - 19578802
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    ||||||||||||||||||||| || ||| ||||||||||||||    
T  19578760 ttgtcattgaaaatgataaatctggtttattgagtttgttaca 19578802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 21960419 - 21960353
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||||||| ||||| || ||| ||  ||||| ||||||||||||||||||||    
T  21960419 gataaatattgtttgttgagtttattacatttgaaagtcgcaaatagctatatttataattttaatc 21960353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 4857314 - 4857367
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    |||||||||  |||||||||| ||| ||||||||  ||||||||||||||||||    
T  4857314 ttatattattgttgtcattgagaatcataaatattgtttgttgagtttgttaca 4857367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 4879042 - 4879095
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    |||||||||  |||||||||| ||| ||||||||  ||||||||||||||||||    
T  4879042 ttatattattgttgtcattgagaatcataaatattgtttgttgagtttgttaca 4879095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 45651334 - 45651282
Alignment:
Q  61 atttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgtta 114  Q
    |||||| |||| ||| |||||||||| |||||| ||||||||||||||||||||    
T  45651334 atttatgttatttttatcattgaaaaagataaa-atgatttgttgagtttgtta 45651282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 151
Target Start/End: Complemental strand, 2699502 - 2699414
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttta 151  Q
    |||||||||  ||||||| |||||  ||||||||| ||| |||||||||||||| || | ||||| |||||   ||| |||||||||||    
T  2699502 ttatattattgttgtcatcgaaaaatataaatatgctttattgagtttgttacatttgagaatcacaaatattcatacttataatttta 2699414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 17035309 - 17035385
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataatttt 150  Q
    |||||||||||||  ||||||||| |||||| ||||||||| | || |||  || ||||| ||||| ||||||||||    
T  17035309 ttgtcattgaaaaatataaatatggtttgttaagtttgttagatttgaaagccacaaatatctataattataatttt 17035385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 159
Target Start/End: Complemental strand, 34796110 - 34796058
Alignment:
Q  108 tttgttacaatttaaaat-cataaatacctatatttataattttaatcaaaat 159  Q
    |||||||||||||||||| |||||||| |||||  || |||||||||||||||    
T  34796110 tttgttacaatttaaaattcataaatatctatacataaaattttaatcaaaat 34796058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 11736 - 11825
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||  |||||||||||||| ||||||||| |||||||||||||||||| || ||| ||| ||||| ||||| |||||||||||||    
T  11736 ttatattattgttgtcattgaaaat-ataaatatggtttgttgagtttgttacatttgaaagtcacaaatatctatacttataattttaat 11825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 11876430 - 11876340
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||| |||| || ||| ||| ||||| ||||| |||| ||||||||    
T  11876430 ttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgatacatttgaaagtcacaaatatctatacttatcattttaat 11876340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 11891437 - 11891347
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||  ||||||||||||| |||||||||||||||||||||||| |||| || ||| ||| ||||| ||||| |||| ||||||||    
T  11891437 ttatattattgttgtcattgaaaaagataaatatgatttgttgagtttgatacatttgaaagtcacaaatatctatacttatcattttaat 11891347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 15899144 - 15899225
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttat 144  Q
    |||||||||  ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||  |||||  |||||||||    
T  15899144 ttatattatcattgtcattgaaaaagataaatatgatttgttgagtttgttacattttaaagtcgcaaatatttatatttat 15899225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 158
Target Start/End: Complemental strand, 29038314 - 29038229
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaattt-aaaatcataaatacctatatttataattttaatcaaaa 158  Q
    |||| |||||||| |||||| ||| ||| ||| |||||||||||||| ||||||| |||||  | |||||||||||||||||||||    
T  29038314 ttgttattgaaaaagataaacatggttttttgggtttgttacaatttgaaaatcacaaatatttgtatttataattttaatcaaaa 29038229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 9014936 - 9014844
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatca 155  Q
    |||||||||  ||||||||||||| ||||| |||| || ||||||||||||||| |  ||| ||| ||| | ||||| |||||||||||||||    
T  9014936 ttatattattgttgtcattgaaaaagataactatggttggttgagtttgttacattcgaaagtcacaaacatctatacttataattttaatca 9014844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 2442479 - 2442530
Alignment:
Q  83 aaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaata 133  Q
    |||| |||||| |||||||||||||||||||||||||||||| |||||||||    
T  2442479 aaaaagataaacatgatttgttgagtttgttacaatttaaaagtcataaata 2442530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 145
Target Start/End: Complemental strand, 7975882 - 7975815
Alignment:
Q  78 cattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttata 145  Q
    ||||||||| |||||||||| |||||||||||||||| | || ||||||| ||||| |||||| ||||    
T  7975882 cattgaaaaagataaatatggtttgttgagtttgttaaatttgaaaatcacaaatatctatatctata 7975815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 2442325 - 2442387
Alignment:
Q  77 tcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaa-tcataaatacctat 138  Q
    |||||||||| |||||| ||||||||||| ||| |||||||||||||| ||||||||| ||||    
T  2442325 tcattgaaaaagataaacatgatttgttgggttagttacaatttaaaagtcataaatatctat 2442387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 8889602 - 8889668
Alignment:
Q  88 gataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||||||  |||||||||||||||||| || ||| ||| ||||| ||||| ||||||||||||||    
T  8889602 gataaatatcgtttgttgagtttgttacatttgaaattcacaaatatctatacttataattttaatc 8889668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 12701581 - 12701671
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaat 153  Q
    |||||||||  ||||||||||| | ||||| |||| |||||||||||||||||| || ||| ||| |||||   ||||||||| |||||||    
T  12701581 ttatattattgttgtcattgaataagataactatggtttgttgagtttgttacatttgaaattcacaaatattcatatttatatttttaat 12701671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 19341909 - 19341963
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaa 117  Q
    |||||||||  ||||||||||||| |||||| |||||||||||| ||||||||||    
T  19341909 ttatattattgttgtcattgaaaaagataaacatgatttgttgactttgttacaa 19341963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 37117879 - 37117929
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaa 124  Q
    |||| |||||||| ||||||||||  || ||||||||||||||||||||||    
T  37117879 ttgtaattgaaaaagataaatatggatttttgagtttgttacaatttaaaa 37117929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 4579038 - 4579107
Alignment:
Q  83 aaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||| |||||||||||||  |||||||| ||||  || ||||||| |||||  |||||||||||||||||||    
T  4579038 aaaaagataaatatgattcattgagtttattacgtttgaaaatcacaaata--tatatttataattttaatc 4579107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 11912073 - 11912142
Alignment:
Q  57 aagaatttatattatattt----gtcattgaaaatgataaatatgatttgttgagtttgttacaatttaa 122  Q
    |||||||||||||| ||||    || |||||||| |||| ||||||||||||| ||||||||| ||||||    
T  11912073 aagaatttatattacattttggtgttattgaaaaagatacatatgatttgttgggtttgttaccatttaa 11912142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 147
Target Start/End: Original strand, 97079 - 97163
Alignment:
Q  63 ttatattatatttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataat 147  Q
    |||||||||  ||||||||||||| |||||||||  |||||||||||||||||| || ||| | | ||||||||||| |||||||    
T  97079 ttatattattgttgtcattgaaaaagataaatatattttgttgagtttgttacatttgaaagtaaaaaatacctatacttataat 97163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 36869 - 36949
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttacaatttaaaatcataaatacctatatttataattttaatc 154  Q
    |||||| |||||| |||||||    |||||||||||||||||| || ||| ||| |||||  |||||||||||||||||||    
T  36869 ttgtcaatgaaaaagataaatcatctttgttgagtttgttacatttaaaagtcacaaatatttatatttataattttaatc 36949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 226386 - 226344
Alignment:
Q  74 ttgtcattgaaaatgataaatatgatttgttgagtttgttaca 116  Q
    |||||||||||||  |||||||||||||||||| |||||||||    
T  226386 ttgtcattgaaaaaaataaatatgatttgttgaatttgttaca 226344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University