View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4938_low_3 (Length: 438)
Name: NF4938_low_3
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4938_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 11 - 421
Target Start/End: Original strand, 52771152 - 52771562
Alignment:
| Q |
11 |
cacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagtt |
110 |
Q |
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| T |
52771152 |
cacagacaagagaaccaaagatgtaaacactcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagtt |
52771251 |
T |
|
| Q |
111 |
ccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatca |
210 |
Q |
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| T |
52771252 |
ccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatca |
52771351 |
T |
|
| Q |
211 |
ctgtgttaatgccagtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgac |
310 |
Q |
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| T |
52771352 |
ctgtgttaatgccagtaaactgttggaacaccatcaatcctgctccaaccatgaatgctagtctgatttctttagatttaaaaacatctttaaatttgac |
52771451 |
T |
|
| Q |
311 |
attcatatttttctgtctgtcttgttctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaaca |
410 |
Q |
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| T |
52771452 |
attcatatttttctgtctgtcttgttctgcctcagctgttagaaaatcaacttcgtcttcaagacgagccaagtcatagatgttggaaatgacatcaaca |
52771551 |
T |
|
| Q |
411 |
gcttcattctt |
421 |
Q |
| |
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| T |
52771552 |
gcttcattctt |
52771562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 39 - 217
Target Start/End: Original strand, 52767225 - 52767403
Alignment:
| Q |
39 |
actcctcctaagctacaaagagctaatatcttcctccctgcatgatcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaaga |
138 |
Q |
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||||||||||||||| | || |||||| | |||| |||||||| ||||| ||||||||||||||||| |||||| ||||||||| ||||||| | || |
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| T |
52767225 |
actcctcctaagctatacagggctaattttttccgtcctgcatggtcaataaggtaaataccaagaactgttccggcagcattcaagccagcaactatga |
52767324 |
T |
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| Q |
139 |
gtgagatttgaagagccaactctttagattgaaatccagccatttgaacaatggttggactgtagtacatcactgtgtt |
217 |
Q |
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| T |
52767325 |
gagagagttgaagagccaactcattagagtgaaagccagccatttggacaattgttggactgtagtacatcactgtgtt |
52767403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 232
Target Start/End: Complemental strand, 392587 - 392439
Alignment:
| Q |
84 |
tcaatgaggtaaataccaagaacagttccgacagcattcattgcagcaacaaagagtgagatttgaagagccaactctttagattgaaatccagccattt |
183 |
Q |
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||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | ||| || | |||||||||||| || | || || |||||||||| |
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| T |
392587 |
tcaataaggtaaatgccaagaattgttccgacagcgttcatgccagcaactatgagggacagaagaagagccaactgattggcatggaagccagccattt |
392488 |
T |
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| Q |
184 |
gaacaatggttggactgtagtacatcactgtgttaatgccagtaaactg |
232 |
Q |
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|||||||||||||||||||||||||||| ||||| || || |||||||| |
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| T |
392487 |
gaacaatggttggactgtagtacatcaccgtgtttatacctgtaaactg |
392439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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