View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4938_low_9 (Length: 233)

Name: NF4938_low_9
Description: NF4938
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4938_low_9
NF4938_low_9
[»] chr2 (5 HSPs)
chr2 (86-217)||(41900441-41900572)
chr2 (86-214)||(41900249-41900377)
chr2 (87-214)||(41900058-41900185)
chr2 (171-217)||(41900094-41900140)
chr2 (157-217)||(41900272-41900332)
[»] chr4 (6 HSPs)
chr4 (117-214)||(24421255-24421352)
chr4 (117-214)||(24470563-24470660)
chr4 (117-214)||(24477392-24477489)
chr4 (119-211)||(24470374-24470466)
chr4 (156-214)||(24420526-24420584)
chr4 (156-214)||(24471042-24471100)
[»] scaffold0879 (1 HSPs)
scaffold0879 (117-211)||(4425-4519)


Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 41900441 - 41900572
Alignment:
Q  86 cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttg 185  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41900441 cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttatagacatacttaggttgtggtgatggagagggaggtggaggagatttg 41900540  T
Q  186 tagacatatggcggaggaggtgaaggagaggg 217  Q
    ||||||||||||||||||||||||||||||||    
T  41900541 tagacatatggcggaggaggtgaaggagaggg 41900572  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 41900249 - 41900377
Alignment:
Q  86 cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttg 185  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||    |||| ||||||| ||||||||||||||||||||||||    
T  41900249 cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttgtagacatatggaggtggtggtgaaggagagggaggtggaggagatttg 41900348  T
Q  186 tagacatatggcggaggaggtgaaggaga 214  Q
    ||||||||||| |||||| ||||||||||    
T  41900349 tagacatatggtggaggaagtgaaggaga 41900377  T

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Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 41900058 - 41900185
Alignment:
Q  87 ttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgt 186  Q
    |||||||  ||||||||||||||   |||| ||||||| |||||||| || || ||||    |||  ||||||| |||||||||||||||||||||||||    
T  41900058 ttgtagacataagaaaggggtagcgatgcatatggtggtggaggagatttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagatttgt 41900157  T
Q  187 agacatatggcggaggaggtgaaggaga 214  Q
    ||||||| || ||||||||||| |||||    
T  41900158 agacatacggtggaggaggtgagggaga 41900185  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 41900094 - 41900140
Alignment:
Q  171 ggtggaggagatttgtagacatatggcggaggaggtgaaggagaggg 217  Q
    ||||||||||||||||| |||||||| || || ||||||||||||||    
T  41900094 ggtggaggagatttgtaaacatatggaggcggtggtgaaggagaggg 41900140  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 41900272 - 41900332
Alignment:
Q  157 gtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggagaggg 217  Q
    |||||| ||| || || |||||||| |||||||||||||| || || ||||||||||||||    
T  41900272 gtgatgcagatggtggaggaggagacttgtagacatatggaggtggtggtgaaggagaggg 41900332  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 24421255 - 24421352
Alignment:
Q  117 gatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 214  Q
    |||||||||||||||||||| |||||||    |||| |||||||||||||||| ||||| |||   || ||||||||||| || ||||||||||||||    
T  24421255 gatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggaga 24421352  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 24470660 - 24470563
Alignment:
Q  117 gatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 214  Q
    |||||||||||||||||||| |||||||    |||| |||||||||||||||| ||||| |||   || ||||||||||| || ||||||||||||||    
T  24470660 gatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaaggaga 24470563  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 214
Target Start/End: Original strand, 24477392 - 24477489
Alignment:
Q  117 gatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 214  Q
    |||||||||||||||||||| |||||||    |||| ||||||||||||| ||  | ||||||   |||||||||||||| || ||||||||||||||    
T  24477392 gatggtggaggaggagacttgtagacatatggaggtggtggtgatggagaaggtagaggaggactcttgtagacatatggtgggggaggtgaaggaga 24477489  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 24470466 - 24470374
Alignment:
Q  119 tggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaagg 211  Q
    |||||||||||||||||| |||||||    |||| |||||||||||||||| ||||| |||   || ||||||||||| || |||||||||||    
T  24470466 tggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaagg 24470374  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 24420526 - 24420584
Alignment:
Q  156 ggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 214  Q
    ||||| ||||| || || |||||||||||||| |||||||| ||||| |||||||||||    
T  24420526 ggtgaaggagatggtgggggaggagatttgtaaacatatggaggagggggtgaaggaga 24420584  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 24471100 - 24471042
Alignment:
Q  156 ggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga 214  Q
    ||||| ||||| || || |||||||||||||| |||||||| ||||| |||||||||||    
T  24471100 ggtgaaggagatggtgggggaggagatttgtaaacatatggaggagggggtgaaggaga 24471042  T

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Target: scaffold0879 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 4519 - 4425
Alignment:
Q  117 gatggtggaggaggagacttatagacatgcttaggttgtggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaagg 211  Q
    |||||||||||||||||||| |||||||    |||| |||||||||||||||| ||||| |||   || ||||||||||| || |||||||||||    
T  4519 gatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtggtggactcttatagacatatggtgggggaggtgaagg 4425  T

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