View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939-Insertion-10 (Length: 417)
Name: NF4939-Insertion-10
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939-Insertion-10 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 7 - 417
Target Start/End: Complemental strand, 6385994 - 6385587
Alignment:
| Q |
7 |
acaaacaaattaccatgttatgaacctcaaaaattgctagtaaaaagtaacttgatctgttttctnnnnnnnncattggcagttgaaaattttcttaaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
6385994 |
acaaacaaattaccatgttatgaacctcaaaaattgcttgtaaaaagtgactt---ctgttttctaaaaaaaacattggcagttgaaaattttcttaaac |
6385898 |
T |
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| Q |
107 |
taatcaaaggctgcaaaatatgcaagaatgaatcatgtttatgaagaactaaaaggagagagggaaataaacaacttacataagtattaagctgacgaac |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6385897 |
taatcaaaggctgcaaaatatgcaagaatgaatcatgtttatgaagaactaaaaggagagagggaaataaacaacttacataagtattaagctgacgaac |
6385798 |
T |
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| Q |
207 |
aaagctagagaaattgttgtgcttaaaatatttaggaagcaaatcccttgcaaaatcagcatgtttccacacaacaaaactttcaccactctcactccat |
306 |
Q |
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| T |
6385797 |
aaagctagagaaattgttgtgcttaaaatatttaggaagcaaatcccttgcaaaatcagcatgtttccacacaacaaaactttcaccactctcactccat |
6385698 |
T |
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| Q |
307 |
gatatcacatcatccgtcgctaaatcatccaccatctgatacgtcttcaacaaaaacggcgccggcgccgaccgctgcaacatttttctccgatcaatcc |
406 |
Q |
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| T |
6385697 |
gatatcacatcatccgtcgctaaatcatccaccatctgatacgtcttcaacaaaaacggcgcaggcgccgaccgctgcgacatttttctccgatcaatcc |
6385598 |
T |
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| Q |
407 |
ttcaactaata |
417 |
Q |
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| T |
6385597 |
ttcaactaata |
6385587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 2910949 - 2910856
Alignment:
| Q |
182 |
ttacataagtattaagctgacgaacaaagctagagaaattgttgtgcttaaaatatttaggaagcaaatcccttgcaaaatcagcatgtttcca |
275 |
Q |
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| T |
2910949 |
ttacataggtattgagttgacgaacgaaactggagaaattattgtgtttgaaatactttggaagcaaatctctagcaaattcagcaggtttcca |
2910856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 45704831 - 45704759
Alignment:
| Q |
182 |
ttacataagtattaagctgacgaacaaagctagagaaattgttgtgcttaaaatatttaggaagcaaatccct |
254 |
Q |
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| T |
45704831 |
ttacataagtattgagttggcgaacgaagctagagaaattgttgtgcttaaaatatttaggaagcaaatccct |
45704759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 227
Target Start/End: Original strand, 26684567 - 26684610
Alignment:
| Q |
184 |
acataagtattaagctgacgaacaaagctagagaaattgttgtg |
227 |
Q |
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| T |
26684567 |
acataagtattaagctgacgaacaaaactggagaaattgttgtg |
26684610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 250
Target Start/End: Complemental strand, 9948 - 9880
Alignment:
| Q |
182 |
ttacataagtattaagctgacgaacaaagctagagaaattgttgtgcttaaaatatttaggaagcaaat |
250 |
Q |
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| T |
9948 |
ttacataagtattgagttgacgaacaaagctggagaaattattgtgtttgaaatatttaggaagcaaat |
9880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 32734771 - 32734724
Alignment:
| Q |
180 |
acttacataagtattaagctgacgaacaaagctagagaaattgttgtg |
227 |
Q |
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| T |
32734771 |
acttacataagtgttgagttgacgaacaaagctagagaaattgttgtg |
32734724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 14865942 - 14865998
Alignment:
| Q |
180 |
acttacataagtattaagctgacgaacaaagctagagaaattgttgtgcttaaaata |
236 |
Q |
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| T |
14865942 |
acttacatatgtattgagctgacgaatgaagctggagaaattgttgtgtttgaaata |
14865998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Complemental strand, 35502614 - 35502552
Alignment:
| Q |
180 |
acttacataagtattaagctgacgaacaaagctagagaaattgttgtgcttaaaatatttagg |
242 |
Q |
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| T |
35502614 |
acttacatatgtattgagttgtcgaataaaactagagaaattgttgtgcttgaaatatttagg |
35502552 |
T |
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