View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4939-Insertion-2 (Length: 1006)

Name: NF4939-Insertion-2
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4939-Insertion-2
NF4939-Insertion-2
[»] chr2 (48 HSPs)
chr2 (265-771)||(9048511-9049015)
chr2 (800-1006)||(9048076-9048282)
chr2 (7-187)||(9049092-9049272)
chr2 (217-356)||(41284572-41284711)
chr2 (23-133)||(6411370-6411480)
chr2 (19-131)||(33634796-33634908)
chr2 (220-335)||(12880083-12880198)
chr2 (19-133)||(12848468-12848582)
chr2 (19-133)||(29685700-29685814)
chr2 (19-114)||(24389638-24389733)
chr2 (19-120)||(6083911-6084012)
chr2 (19-132)||(21277549-21277661)
chr2 (33-133)||(3666434-3666534)
chr2 (19-123)||(33454964-33455068)
chr2 (34-133)||(44838627-44838727)
chr2 (245-335)||(41311720-41311810)
chr2 (33-110)||(8086965-8087042)
chr2 (19-88)||(12762912-12762981)
chr2 (19-110)||(4654980-4655071)
chr2 (19-122)||(6334679-6334782)
chr2 (34-132)||(33068540-33068638)
chr2 (19-90)||(3074076-3074148)
chr2 (33-149)||(3191170-3191285)
chr2 (23-131)||(8964392-8964500)
chr2 (19-131)||(565690-565804)
chr2 (243-334)||(4640207-4640298)
chr2 (37-87)||(431676-431726)
chr2 (243-337)||(32838627-32838721)
chr2 (19-85)||(37284930-37284996)
chr2 (19-132)||(40874811-40874925)
chr2 (34-90)||(9448466-9448522)
chr2 (19-102)||(30869589-30869670)
chr2 (41-133)||(32066740-32066832)
chr2 (36-131)||(33962941-33963036)
chr2 (37-132)||(42342487-42342581)
chr2 (19-85)||(30822764-30822830)
chr2 (243-316)||(19002765-19002838)
chr2 (38-114)||(27692745-27692822)
chr2 (275-335)||(3272363-3272423)
chr2 (35-110)||(14295640-14295715)
chr2 (243-334)||(40462081-40462172)
chr2 (19-114)||(44195503-44195598)
chr2 (252-302)||(752182-752232)
chr2 (68-114)||(15806055-15806101)
chr2 (33-131)||(30523013-30523111)
chr2 (69-122)||(13197296-13197349)
chr2 (21-82)||(28858102-28858162)
chr2 (217-282)||(40867915-40867980)
[»] chr4 (42 HSPs)
chr4 (216-370)||(26683600-26683754)
chr4 (217-369)||(14193811-14193963)
chr4 (19-132)||(53261554-53261667)
chr4 (19-103)||(49951716-49951800)
chr4 (217-316)||(38868837-38868936)
chr4 (21-114)||(36876072-36876165)
chr4 (23-132)||(45743315-45743424)
chr4 (19-123)||(52650696-52650800)
chr4 (19-90)||(50617492-50617563)
chr4 (217-364)||(53333517-53333664)
chr4 (19-132)||(40252652-40252764)
chr4 (19-90)||(23136546-23136617)
chr4 (19-126)||(31262912-31263018)
chr4 (20-122)||(35153248-35153351)
chr4 (19-132)||(49795141-49795254)
chr4 (34-121)||(4391979-4392067)
chr4 (19-90)||(17970806-17970878)
chr4 (34-133)||(18939864-18939963)
chr4 (22-114)||(25042749-25042837)
chr4 (206-336)||(24970939-24971069)
chr4 (34-155)||(22889271-22889392)
chr4 (34-155)||(22940935-22941056)
chr4 (19-87)||(27963156-27963225)
chr4 (23-123)||(19597156-19597256)
chr4 (19-110)||(37461492-37461582)
chr4 (19-133)||(53622299-53622414)
chr4 (19-85)||(2818355-2818421)
chr4 (243-317)||(31557462-31557536)
chr4 (271-329)||(34015938-34015996)
chr4 (243-337)||(38547460-38547554)
chr4 (23-132)||(38681987-38682096)
chr4 (17-83)||(50343882-50343948)
chr4 (19-128)||(47937859-47937968)
chr4 (278-335)||(48051730-48051787)
chr4 (19-87)||(21241123-21241191)
chr4 (19-90)||(38354520-38354592)
chr4 (19-83)||(40173524-40173588)
chr4 (35-131)||(41370166-41370262)
chr4 (19-85)||(7852588-7852654)
chr4 (19-85)||(47995781-47995847)
chr4 (23-77)||(49622998-49623052)
chr4 (21-78)||(46570576-46570633)
[»] chr5 (36 HSPs)
chr5 (217-373)||(6539796-6539952)
chr5 (229-364)||(4462568-4462703)
chr5 (36-133)||(27325820-27325917)
chr5 (23-132)||(38594928-38595037)
chr5 (21-131)||(26453639-26453748)
chr5 (24-132)||(21259415-21259523)
chr5 (22-133)||(26432261-26432372)
chr5 (19-153)||(10228315-10228448)
chr5 (33-133)||(22601785-22601885)
chr5 (243-373)||(1863125-1863255)
chr5 (19-132)||(12221433-12221546)
chr5 (21-110)||(14309106-14309195)
chr5 (243-334)||(6662077-6662169)
chr5 (19-90)||(4695068-4695139)
chr5 (29-120)||(26686661-26686752)
chr5 (29-120)||(26956392-26956483)
chr5 (21-88)||(41568708-41568775)
chr5 (71-133)||(16636659-16636721)
chr5 (249-329)||(14688752-14688832)
chr5 (23-132)||(17774279-17774388)
chr5 (41-130)||(28639570-28639660)
chr5 (33-87)||(43000759-43000813)
chr5 (258-335)||(844745-844822)
chr5 (258-307)||(26449264-26449313)
chr5 (34-110)||(36609150-36609226)
chr5 (276-335)||(38328685-38328744)
chr5 (243-334)||(38370547-38370638)
chr5 (19-110)||(39177678-39177768)
chr5 (19-90)||(39335666-39335736)
chr5 (297-335)||(18730394-18730432)
chr5 (19-81)||(25767573-25767635)
chr5 (19-77)||(34032142-34032200)
chr5 (243-316)||(9515545-9515617)
chr5 (19-108)||(12448667-12448756)
chr5 (93-130)||(41916260-41916297)
chr5 (32-85)||(42488619-42488672)
[»] chr3 (42 HSPs)
chr3 (19-133)||(48551036-48551150)
chr3 (19-131)||(45757925-45758037)
chr3 (228-369)||(36473082-36473223)
chr3 (23-132)||(12140145-12140255)
chr3 (19-132)||(25317801-25317914)
chr3 (19-128)||(37388403-37388511)
chr3 (19-108)||(37708433-37708522)
chr3 (21-114)||(54911199-54911292)
chr3 (19-133)||(46725653-46725767)
chr3 (19-77)||(28691976-28692034)
chr3 (243-317)||(39818854-39818928)
chr3 (34-131)||(14146111-14146208)
chr3 (243-335)||(44720880-44720972)
chr3 (23-114)||(45584343-45584432)
chr3 (278-337)||(29577267-29577326)
chr3 (24-87)||(37359467-37359530)
chr3 (19-132)||(24313547-24313661)
chr3 (45-90)||(25061989-25062034)
chr3 (245-317)||(34211998-34212070)
chr3 (243-318)||(48600631-48600704)
chr3 (19-109)||(9342672-9342763)
chr3 (256-335)||(15985277-15985356)
chr3 (59-154)||(33072087-33072181)
chr3 (245-364)||(42983896-42984015)
chr3 (243-318)||(45153528-45153603)
chr3 (31-84)||(38101341-38101393)
chr3 (255-312)||(43767323-43767380)
chr3 (34-131)||(46711912-46712009)
chr3 (19-87)||(29612016-29612084)
chr3 (39-87)||(40614308-40614356)
chr3 (247-335)||(42785494-42785581)
chr3 (258-337)||(50037192-50037272)
chr3 (19-133)||(3026980-3027095)
chr3 (276-335)||(31596301-31596360)
chr3 (258-329)||(31752692-31752763)
chr3 (258-337)||(31830185-31830264)
chr3 (258-337)||(44344717-44344796)
chr3 (34-131)||(20821314-20821412)
chr3 (275-337)||(31844987-31845049)
chr3 (252-337)||(14030271-14030356)
chr3 (34-79)||(16678935-16678980)
chr3 (19-108)||(39400298-39400387)
[»] chr8 (41 HSPs)
chr8 (19-132)||(12002263-12002376)
chr8 (19-133)||(14016863-14016977)
chr8 (19-132)||(1876479-1876592)
chr8 (243-335)||(42350407-42350499)
chr8 (19-157)||(18842223-18842365)
chr8 (23-132)||(40628964-40629073)
chr8 (25-87)||(44220752-44220814)
chr8 (22-110)||(20522943-20523031)
chr8 (19-133)||(11533228-11533342)
chr8 (23-132)||(30486609-30486719)
chr8 (19-132)||(39594486-39594599)
chr8 (19-131)||(2376726-2376838)
chr8 (24-87)||(37449541-37449604)
chr8 (217-335)||(14955218-14955336)
chr8 (34-129)||(44907229-44907325)
chr8 (19-110)||(7627866-7627957)
chr8 (41-132)||(44024029-44024122)
chr8 (249-337)||(471997-472085)
chr8 (50-130)||(36907827-36907907)
chr8 (34-110)||(43841043-43841119)
chr8 (56-131)||(26014752-26014827)
chr8 (243-306)||(42631713-42631776)
chr8 (258-337)||(44711460-44711539)
chr8 (23-85)||(5218080-5218142)
chr8 (21-87)||(28382827-28382893)
chr8 (23-77)||(32271170-32271224)
chr8 (19-132)||(35501064-35501178)
chr8 (245-335)||(44063098-44063188)
chr8 (38-110)||(9629838-9629910)
chr8 (18-83)||(30158108-30158173)
chr8 (19-131)||(38047607-38047720)
chr8 (247-335)||(37953248-37953336)
chr8 (19-75)||(38019472-38019528)
chr8 (19-131)||(39691112-39691224)
chr8 (34-132)||(31844214-31844313)
chr8 (19-108)||(7513316-7513405)
chr8 (258-335)||(7859118-7859195)
chr8 (34-131)||(27505979-27506075)
chr8 (19-131)||(27801223-27801336)
chr8 (243-324)||(34496892-34496973)
chr8 (249-302)||(38869108-38869161)
[»] chr1 (45 HSPs)
chr1 (19-132)||(39973888-39974001)
chr1 (21-133)||(48947202-48947314)
chr1 (19-114)||(42573784-42573879)
chr1 (19-132)||(33791736-33791849)
chr1 (34-133)||(290602-290701)
chr1 (217-369)||(42826537-42826691)
chr1 (19-154)||(35259023-35259156)
chr1 (19-133)||(40286854-40286968)
chr1 (217-334)||(29356896-29357012)
chr1 (43-132)||(38172665-38172754)
chr1 (19-131)||(48884-48996)
chr1 (19-132)||(49478808-49478922)
chr1 (217-326)||(15280480-15280589)
chr1 (19-123)||(3047863-3047967)
chr1 (23-131)||(40053293-40053401)
chr1 (33-133)||(51904565-51904665)
chr1 (19-110)||(16113915-16114006)
chr1 (19-133)||(4040889-4041003)
chr1 (21-107)||(31042999-31043085)
chr1 (19-90)||(34861251-34861322)
chr1 (34-132)||(31398408-31398506)
chr1 (19-96)||(33744168-33744245)
chr1 (276-337)||(42592678-42592739)
chr1 (19-108)||(48811929-48812018)
chr1 (249-337)||(28765519-28765607)
chr1 (23-87)||(31807822-31807886)
chr1 (23-131)||(35543401-35543509)
chr1 (19-126)||(290852-290959)
chr1 (21-132)||(24034055-24034166)
chr1 (252-335)||(34620617-34620700)
chr1 (243-317)||(2507012-2507086)
chr1 (289-335)||(17630326-17630372)
chr1 (19-133)||(46804820-46804934)
chr1 (19-108)||(4521029-4521118)
chr1 (23-123)||(44442250-44442350)
chr1 (258-317)||(27262759-27262818)
chr1 (290-364)||(1905709-1905783)
chr1 (21-123)||(5423752-5423854)
chr1 (19-109)||(26700245-26700335)
chr1 (20-78)||(34833738-34833796)
chr1 (217-302)||(1411676-1411760)
chr1 (243-316)||(1609740-1609812)
chr1 (39-84)||(8791485-8791530)
chr1 (19-108)||(36321646-36321735)
chr1 (45-122)||(44461597-44461673)
[»] chr7 (37 HSPs)
chr7 (217-341)||(31188731-31188855)
chr7 (217-367)||(5000330-5000481)
chr7 (34-133)||(8237961-8238060)
chr7 (19-132)||(3267607-3267720)
chr7 (23-132)||(34299740-34299849)
chr7 (24-132)||(19619993-19620101)
chr7 (23-133)||(24299127-24299237)
chr7 (23-132)||(26871771-26871880)
chr7 (250-347)||(23797722-23797819)
chr7 (21-132)||(24610835-24610946)
chr7 (227-328)||(27088307-27088409)
chr7 (227-328)||(27189892-27189994)
chr7 (25-132)||(5482405-5482511)
chr7 (19-133)||(5907820-5907933)
chr7 (19-82)||(31498676-31498739)
chr7 (19-122)||(39316300-39316403)
chr7 (23-110)||(41150034-41150121)
chr7 (19-77)||(25176340-25176398)
chr7 (19-156)||(44452015-44452152)
chr7 (258-335)||(35116895-35116972)
chr7 (23-87)||(25037007-25037071)
chr7 (19-87)||(43492244-43492312)
chr7 (220-279)||(36595376-36595435)
chr7 (19-131)||(38988702-38988816)
chr7 (23-83)||(38362255-38362315)
chr7 (19-114)||(18926323-18926418)
chr7 (19-114)||(23682468-23682561)
chr7 (254-317)||(35494685-35494748)
chr7 (250-305)||(35720981-35721036)
chr7 (243-337)||(43189821-43189916)
chr7 (19-110)||(46716175-46716266)
chr7 (250-316)||(4232761-4232827)
chr7 (44-90)||(10453485-10453531)
chr7 (34-108)||(42911071-42911145)
chr7 (258-335)||(28198010-28198087)
chr7 (18-59)||(41431161-41431202)
chr7 (254-335)||(47356600-47356681)
[»] chr6 (19 HSPs)
chr6 (217-373)||(10228308-10228463)
chr6 (19-132)||(5704555-5704667)
chr6 (34-133)||(10364754-10364853)
chr6 (227-369)||(3686800-3686942)
chr6 (19-132)||(13445728-13445841)
chr6 (217-335)||(8082455-8082572)
chr6 (33-110)||(10429738-10429814)
chr6 (19-82)||(3753142-3753205)
chr6 (19-120)||(3769326-3769428)
chr6 (38-131)||(30910428-30910521)
chr6 (245-317)||(32547693-32547765)
chr6 (23-132)||(29716761-29716871)
chr6 (22-83)||(34552549-34552610)
chr6 (41-85)||(34552221-34552265)
chr6 (19-132)||(6586414-6586527)
chr6 (19-87)||(12226696-12226765)
chr6 (33-133)||(21130706-21130807)
chr6 (19-108)||(30509312-30509401)
chr6 (255-312)||(31597543-31597600)
[»] scaffold0010 (1 HSPs)
scaffold0010 (19-114)||(26697-26792)
[»] scaffold0495 (1 HSPs)
scaffold0495 (217-373)||(5027-5182)
[»] scaffold0037 (1 HSPs)
scaffold0037 (33-133)||(35273-35372)
[»] scaffold0236 (1 HSPs)
scaffold0236 (34-133)||(19578-19677)
[»] scaffold0564 (1 HSPs)
scaffold0564 (245-317)||(3979-4051)
[»] scaffold0316 (1 HSPs)
scaffold0316 (245-317)||(3278-3350)
[»] scaffold0053 (1 HSPs)
scaffold0053 (19-77)||(5758-5816)
[»] scaffold0019 (1 HSPs)
scaffold0019 (249-305)||(48415-48470)
[»] scaffold0392 (1 HSPs)
scaffold0392 (273-335)||(13687-13749)
[»] scaffold0066 (1 HSPs)
scaffold0066 (287-356)||(34399-34468)


Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 48)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 265 - 771
Target Start/End: Complemental strand, 9049015 - 9048511
Alignment:
Q  265 acattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaactattactctgagggcactggtgagcaaga 364  Q
    ||||| || |||||||||||||| ||||||||||||||||||| ||||||||   |||||||||| ||||  ||| || |||||||  |||| | |||||    
T  9049015 acattgaaggtttaaaaagtaatcttttctacataaaatttattaattatttttatttttaaatctttaatcattgctatgagggc--tggttaacaaga 9048918  T
Q  365 tccttaaaagaaacacaagatgacaaagagataataggagggtaggtgttgcaaagaacaaggtcggcaaaagtaagggcttcgatttaagcgaaggagg 464  Q
     |||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9048917 cccttgaaa-aaacacaagatgacaaagagataatagtagggtaggtgttgcaaagaacaaggtcggcaaaagtaagggcttcgatttaagcgaaggagg 9048819  T
Q  465 cagaacaaataaactccactattcaatttgacacttgactccaaaatctctttttccttggacttcgaggtgtacccatttt-atttattctttctatga 563  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9048818 cagaacaaataaactccactattcaatttgacacttgactccaaaatctctttttccttggacttcgaggtgtacccatttttatttattctttctatga 9048719  T
Q  564 tactctttcaaatttcaacatcacttccaccgcttttactacatttttcccttttataataacttactatgaattttagcataatttctttccattattt 663  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9048718 tactctttcaaatttcaacatcacttccaccgcttttactacatttttcccttttataatcacttactatgaattttagcataatttctttccattattt 9048619  T
Q  664 tgctttcggcttttgttcggttcttgtgaaaggattagtcgtttttataaaactttatgcataacgcacacccaagtcacccatccaataatcacaagat 763  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9048618 tgctttcggcttttgttcggttcttgtgaaaggattagtcgtttttataaaactttatgcataacgcacacccaagtcacccatccaataatcacaagat 9048519  T
Q  764 tcacaaca 771  Q
    ||||||||    
T  9048518 tcacaaca 9048511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 800 - 1006
Target Start/End: Complemental strand, 9048282 - 9048076
Alignment:
Q  800 attttatatatactgtgatctttttgacatgcatgatattgatattcatcattcatgtatgtatgttctctctagaggcggcaaac-ggagaatcctctt 898  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  9048282 attttatatatactgtgatctttttgacatgcatgatattgatattcatcattcatgtatgtatgttctctctagaggcggcaaacgggagaattctctt 9048183  T
Q  899 agagactatataagttgtaacttgtaattcacactcattcattaattaatgaagaatattattcatgttttctgatcgtagttattccacttttgatgat 998  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| || |||| | |||| | | ||||||||||||    
T  9048182 agagactatataagttgtaacttgtaattcacactcattcgttaattaatg-agaatattattcatgtcttttgattgcagttctactacttttgatgat 9048084  T
Q  999 tttttggt 1006  Q
    ||||||||    
T  9048083 tttttggt 9048076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 9049272 - 9049092
Alignment:
Q  7 ataaatgatataactctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttata 106  Q
    ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | || ||| |||||||||||    
T  9049272 ataaatgatatgattgtttaagcatgttaaattaagtaattattcttttaaaatgttaaatttttcaattttcaatgcattaattacacaaatttttata 9049173  T
Q  107 aaaagttattatttaaggtccttaactcgagcactagttaacatttcccaacttttaatttggttaggattatttgtcatt 187  Q
    ||||||||||||||||||| |||||  |||||| |||||||||||| ||| |||||||||| |||||||||||||||||||    
T  9049172 aaaagttattatttaaggttcttaatccgagcattagttaacattttccatcttttaatttagttaggattatttgtcatt 9049092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 217 - 356
Target Start/End: Complemental strand, 41284711 - 41284572
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| ||||||||  ||||| | ||||  ||||||||||||||| ||| | |||||||||||||||| | |||||||||||||||||| ||||||||    
T  41284711 ttaagaagtctaaaaaaaaagttttgtcttagaaatgatgcattcaagacactgaaagtttaaaaagtaacactttctacataaaatttataaattattt 41284612  T
Q  317 ccgtttttaaatccttaactattactctgagggcactggt 356  Q
    |  |||||||||||||||| |||  || |||| |||||||    
T  41284611 ctatttttaaatccttaaccattgttccgaggacactggt 41284572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 6411480 - 6411370
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    ||||| |||| ||||| ||||||||||||||||||||| | ||| |||||||||| ||||| |||||| ||| | | |||||||||||||||||||||||    
T  6411480 tttaaacatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgtactgattacacatacttttataaaaagttattatttaa 6411381  T
Q  123 ggtccttaact 133  Q
    ||| |||||||    
T  6411380 ggttcttaact 6411370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 33634908 - 33634796
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| |||||||||||| ||||||||| |||||||| | ||| |||||||||| ||||| ||||||  || || |||||||||||||||| |||    
T  33634908 actctttaaggatgttaaattaaataattattcgtttaaaatatgaaagttttcaatttccaatgtactgattgcacaactttttataaaaagttactat 33634809  T
Q  119 ttaaggtccttaa 131  Q
    |||| ||||||||    
T  33634808 ttaaagtccttaa 33634796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 220 - 335
Target Start/End: Original strand, 12880083 - 12880198
Alignment:
Q  220 agaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccg 319  Q
    ||||||||||| |||||||| | ||||| ||| | || |||||| ||||| ||| ||||||||||||| |||||||||||||| |||| ||||||||||     
T  12880083 agaaatctaaagaggaagttttatcttggaaacggtgtattcaacacattgaaattttaaaaagtaattttttctacataaaacttatcaattatttcca 12880182  T
Q  320 tttttaaatccttaac 335  Q
    ||||| ||||||||||    
T  12880183 tttttgaatccttaac 12880198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 12848582 - 12848468
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||||||| ||||||||||||| |||||||| | ||||| ||| |||||||||| || |||||| || ||| ||| ||| |||||||||| | ||    
T  12848582 actctttaagcatattaaattaagtaactattctttaataatgtcaaagttttcaatttccattgcactaattacacaaactttcataaaaagttgtcat 12848483  T
Q  119 ttaaggtccttaact 133  Q
    |||||||||||||||    
T  12848482 ttaaggtccttaact 12848468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 29685814 - 29685700
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||| ||||| ||||||||||||||| ||||| | ||| || ||||||||||| |||| ||| ||| |||||||| ||||||||||||||    
T  29685814 actctttaaacatgctaaataaagtaattattctttcaaaatttaaaagttctcaattttcaacgcaccgattacacaaatttttgtaaaaagttattat 29685715  T
Q  119 ttaaggtccttaact 133  Q
    || || |||||||||    
T  29685714 tttagatccttaact 29685700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 24389733 - 24389638
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||| |||||| ||||| ||| ||| ||| |||| ||||||    
T  24389733 actctttaagcatgctaaattaagtaattattcttttaagatgtcaaagttttcaatttccaatgcgctgattacacaaactttcataagaagtta 24389638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 6084012 - 6083911
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||  |||||| |||||||||| ||||||||| | ||| ||||||||||||||||  ||||| ||| ||| |||||||||||||||| ||    
T  6084012 actctttaagcatactaaatttagtaattattattttaaaatatcaaagttttcaattttcaatgtgctgattacacaaacttttataaaaagttatcat 6083913  T
Q  119 tt 120  Q
    ||    
T  6083912 tt 6083911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 21277549 - 21277661
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| || |||||||||||||||||| ||||||||||| ||||||||||| || |||||||||||| |||  || ||||||||||  |||  ||    
T  21277549 actctttaagtattttaaattaagtaattatttttttaaaatgtcaaacttttcaa-ttgcaatgcactgattacagtaacttttataaaagtttaccat 21277647  T
Q  119 ttaaggtccttaac 132  Q
    ||||| ||||||||    
T  21277648 ttaagatccttaac 21277661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 3666534 - 3666434
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||||||||||||||||| ||||| ||||| |||| |||| ||||| || |||| ||||||| ||| ||||||| |||||||||||| || |||||    
T  3666534 ttaaattaagtaattattctttaaaaatattaaaatttttaattctcaatacattgattacataaactttcataaaaaattattatttaagatctttaac 3666435  T
Q  133 t 133  Q
    |    
T  3666434 t 3666434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 33454964 - 33455068
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||||||| || |||||||| ||||||| ||| |||||||||| |||| || |||| ||| || |||| ||||||||||| |||    
T  33454964 actctttaagcatgctaaattaagaaactattctttaaaaatgtcaaagttttcaatttacaatacattgattacacaacttttcataaaaagttactat 33455063  T
Q  119 ttaag 123  Q
    |||||    
T  33455064 ttaag 33455068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 44838627 - 44838727
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttat-aaaaagttattatttaaggtccttaac 132  Q
    ||||| ||||||||||||||||||||| | |||   ||||||||||||| || |||| ||| ||| |||||| |||||||||||||||||||||||||||    
T  44838627 taaataaagtaattattcttttaaaatttaaaaaaattcaattttcaatacattgattacacaaacttttataaaaaagttattatttaaggtccttaac 44838726  T
Q  133 t 133  Q
    |    
T  44838727 t 44838727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 41311720 - 41311810
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||| ||||||| || | ||| ||||||||||||||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||    
T  41311720 ttgaaaattatgcatttaacaaattgaaagtttaaaaagtaattttttctacataaaatttataaatcatttacatttttgaatccttaac 41311810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 8086965 - 8087042
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||| |||||||| ||| ||||||||||||||||||||||| |||| || ||| ||||||| |||||||||||    
T  8086965 ttaaattaaataattattttttaaaaatgttaaacttttcaatttttaatgtaccgataacataaacttttataaaaa 8087042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 12762981 - 12762912
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactg 88  Q
    ||||||||||||| | |||||||||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  12762981 actctttaagcatttaaaattaagtaattattcttaaaaaatgttaaaattttcaatttccaatgcactg 12762912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 4655071 - 4654980
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||||||||||| |||||||  |||||||| ||||||||| | ||| ||||||||||||||||||| ||| ||| ||| |||| ||||||    
T  4655071 actctttaagcatgctaaattagataattatttttttaaaatatcaaagttttcaattttcaatgcaccgattacacaaacttttgtaaaaa 4654980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 6334782 - 6334679
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||| ||||||||  ||||||| ||| ||||||| ||| |||||||||| ||||||| |||| | ||||| |||| ||||||||||| ||    
T  6334782 actctttaaacatgctaaattaaaaaattattttttaaaaatgtcaaagttttcaatttccaatgcattgattatataaacttttgtaaaaagttatcat 6334683  T
Q  119 ttaa 122  Q
    ||||    
T  6334682 ttaa 6334679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 33068638 - 33068540
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    ||||||||||||||||| ||| ||||||| ||| ||||||||||  ||||||||||| | | ||| ||| ||||||||||| | |||| ||||||||||    
T  33068638 taaattaagtaattattttttaaaaatgtgaaagttttcaatttctaatgcactgattatacaaactttcataaaaagttactttttatggtccttaac 33068540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 3074076 - 3074148
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaa-cttttcaattttcaatgcactgat 90  Q
    |||||||||||||| |||||||||||||||||| |||||||| | |||  |||||||||| ||||||||||||    
T  3074076 actctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgcactgat 3074148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 3191170 - 3191285
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    ||||||||| |||||| ||||| ||||| ||||| ||||||||||||| |||| |||| | | ||| ||||||||||| |||| ||||||  || |||||    
T  3191170 ttaaattaaataattagtctttaaaaatattaaatttttcaattttcattgcattgattatacaaacttttataaaaatttatcatttaaaatctttaac 3191269  T
Q  133 tcgagcactagttaaca 149  Q
    | | |||||||||||||    
T  3191270 t-gcgcactagttaaca 3191285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 8964392 - 8964500
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||  ||||||||||||||||||||| |||| || |||  ||||||||| ||||||| |||| ||| ||||||| ||||| | ||||||  ||     
T  8964392 tttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttcataaatacttattacatat 8964491  T
Q  123 ggtccttaa 131  Q
    |||||||||    
T  8964492 ggtccttaa 8964500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 565804 - 565690
Alignment:
Q  19 actctttaagcatgttaaattaagtaat--tattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttatt 116  Q
    |||||||||||||| ||||||||||||   |||||||| ||||||| ||| |||||||||| | ||||||| || ||| ||| ||| ||||||||||| |    
T  565804 actctttaagcatgctaaattaagtaaaagtattctttaaaaatgtgaaagttttcaatttcctatgcactaattacacaaactttcataaaaagttact 565705  T
Q  117 atttaaggtccttaa 131  Q
     |||| | |||||||    
T  565704 ttttatgatccttaa 565690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 4640207 - 4640298
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaa 334  Q
    |||||| |||||||||||||| || || ||| |||||||||| |  |||||||| ||||| |||| |||||||| | |||||||||||||||    
T  4640207 tcttgagaatgatgcattcaacacgttgaaaatttaaaaagttactttttctacgtaaaacttataaattattttcatttttaaatccttaa 4640298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 87
Target Start/End: Complemental strand, 431726 - 431676
Alignment:
Q  37 attaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||||||||||||| ||||||||||| |||||||||| |||||||||    
T  431726 attaagtaattattctttaaaaatgttaaaattttcaatttccaatgcact 431676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 32838721 - 32838627
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    ||||| |||||||||||||||  |||| ||| ||||||| |||| ||||||||  |||||||||| |||||||| | |||||  |||||||||||    
T  32838721 tcttggaaatgatgcattcaatgcattgaaactttaaaatgtaacattttctatttaaaatttatcaattattttcatttttgtatccttaacta 32838627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 37284996 - 37284930
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||||||  || |||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||    
T  37284996 actctttaaatattttaaattaagtaattattttttaaaaatcttaaatttttcaattttcaatgca 37284930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 40874811 - 40874925
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaac-ttttcaattttcaatgcactgatcacataaatttttataaaaagttatta 117  Q
    ||||||||| | | |||||||||||||||||| ||| |||||||||||| |||||||||||||| ||||| ||  ||  || ||| ||||||  ||| ||    
T  40874811 actctttaaactttttaaattaagtaattattttttaaaaatgttaaactttttcaattttcaacgcactaatggcactaactttcataaaagtttacta 40874910  T
Q  118 tttaaggtccttaac 132  Q
    ||||| |||||||||    
T  40874911 tttaaagtccttaac 40874925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 9448466 - 9448522
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    ||||||||||| ||||| ||| ||| ||| |||||||||||||||||||||||||||    
T  9448466 taaattaagtagttattttttaaaactgtcaaacttttcaattttcaatgcactgat 9448522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 30869670 - 30869589
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttt 102  Q
    |||||||||||||| |||||||| |  ||||||||| ||||||||||| ||||||||||  ||| ||||||| ||| |||||||    
T  30869670 actctttaagcatgctaaattaaat--ttattctttaaaaatgttaaagttttcaatttctaatacactgataacacaaatttt 30869589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 32066740 - 32066832
Alignment:
Q  41 agtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    |||||||||| |||| |||||| ||| |||| |||||  |||| ||| || ||| ||| ||| |||||||||||| |||||||||||||||||    
T  32066740 agtaattattttttttaaatgtcaaagtttttaatttctaatgtactaattacacaaactttcataaaaagttataatttaaggtccttaact 32066832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 131
Target Start/End: Complemental strand, 33963036 - 33962941
Alignment:
Q  36 aattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||||| ||||||||||| |||| ||| |||  |||||||||||||||| |||   || || |||| ||||||| ||||||||||| ||||||||    
T  33963036 aattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttattatttaaagtccttaa 33962941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 42342581 - 42342487
Alignment:
Q  37 attaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    ||||| |||||||||||| ||||||| ||| ||||||||||| ||| ||||||| | | ||||||| |||||||||||  ||||||  ||||||||    
T  42342581 attaaataattattctttaaaaatgtcaaaattttcaatttt-aatacactgattaaacaaattttcataaaaagttaccatttaatatccttaac 42342487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 30822830 - 30822764
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||| |||| | |||||||||||||||||| ||| ||||||| ||| |||||||||| |||||||    
T  30822830 actcttaaagctttttaaattaagtaattattttttgaaaatgtcaaagttttcaatttccaatgca 30822764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 316
Target Start/End: Complemental strand, 19002838 - 19002765
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||| ||||| |||||||||  |||| ||| ||||||||||||  |||||||| |||||||||| ||||||||    
T  19002838 tcttggaaatggtgcattcaatgcattgaaattttaaaaagtaaatttttctacttaaaatttatcaattattt 19002765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 27692822 - 27692745
Alignment:
Q  38 ttaagtaattattcttttaaaatgttaaactttt-caattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||||||||| |||| |||||| ||  |||| |||||| ||||||| | || |||||||||||||||||||||||    
T  27692822 ttaagtaattattttttttaaatgtaaatgtttttcaatttccaatgcatttattacataaatttttataaaaagtta 27692745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 275 - 335
Target Start/End: Complemental strand, 3272423 - 3272363
Alignment:
Q  275 tttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||| |||  |||||| |||||||||||  |||||||||| ||||||||||||||||    
T  3272423 tttaaaaaataactttttcttcataaaatttaccaattatttccatttttaaatccttaac 3272363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 14295640 - 14295715
Alignment:
Q  35 aaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||| ||||||||||||||||||| |||||   || |||||||||||||| |||  ||| || ||||||||||||    
T  14295640 aaatttagtaattattcttttaaaaggttaactattacaattttcaatgcattgaatacacaactttttataaaaa 14295715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 40462172 - 40462081
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaa 334  Q
    |||||| ||||||  |||||| | |||| || ||||||||||||| |||||||||||||| |||| ||||  |||  |||||||||| ||||    
T  40462172 tcttgagaatgatatattcaagatattagaaatttaaaaagtaattttttctacataaaacttataaattgcttctatttttaaatctttaa 40462081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 44195503 - 44195598
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||||||||| |||||||||| |||||||||||  ||| ||||||   |||||||| ||||||| | |  ||| |  ||||||||||||||||    
T  44195503 actctttaagcattttaaattaagaaattattctttacaaaagttaaataattcaatttacaatgcattaaatacacatgtttttataaaaagtta 44195598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 752232 - 752182
Alignment:
Q  252 tgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaa 302  Q
    |||||||||||| ||||| ||| || |||||||||| ||||||||||||||    
T  752232 tgatgcattcaacacattgaaacttgaaaaagtaattttttctacataaaa 752182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 15806101 - 15806055
Alignment:
Q  68 ttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||||    
T  15806101 ttttcaattttcaatgcattgattacacaaacttttataaaaagtta 15806055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 131
Target Start/End: Original strand, 30523013 - 30523111
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||||||| ||||| |||||| | ||||| ||| |||||||||| ||||| ||| || ||| ||| ||| |||||||||||  || |||||| |||||    
T  30523013 ttaaattaaataatttttctttaacaatgtcaaagttttcaatttccaatgtactaattacacaaactttcataaaaagttaccatctaaggtacttaa 30523111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Original strand, 13197296 - 13197349
Alignment:
Q  69 tttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||| |||||| | || ||||||||||||||||||| |||| ||||||    
T  13197296 tttcaatttttaatgcattaattacataaatttttataaaaaattatcatttaa 13197349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 28858102 - 28858162
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaat 82  Q
    |||||||||||  |||||||||||| |||||||| ||||||| ||| |||| ||||||||||    
T  28858102 tctttaagcattctaaattaagtaaatattctttaaaaatgtcaaa-tttttaattttcaat 28858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 40867915 - 40867980
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaa 282  Q
    ||||||| | |||||| |||||| | |||| ||||||||| |||||| ||||| ||||||||||||    
T  40867915 ttaagaagtttaaaaatgaagttttgtctttaaaatgatgtattcaacacattgaaagtttaaaaa 40867980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 1e-43; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 216 - 370
Target Start/End: Complemental strand, 26683754 - 26683600
Alignment:
Q  216 attaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatt 315  Q
    |||||||| ||||||| ||||||| | |||||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||    
T  26683754 attaagaagtctaaaagggaagttttgtcttgaaaataatgcattcaagacattgaaaatttaaaaagtaatattttctacataaaatttataaattatt 26683655  T
Q  316 tccgtttttaaatccttaactattactctgagggcactggtgagcaagatcctta 370  Q
    ||| |||||||||||||||| |||||  |||||||| |||| ||||||| |||||    
T  26683654 tccatttttaaatccttaaccattaccatgagggcattggttagcaagaccctta 26683600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 14193963 - 14193811
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | ||||||||||||| | ||| | ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||||    
T  14193963 ttaagaagtttaaaaaggaagttttatctcggaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaatttataaattattt 14193864  T
Q  317 ccgtttttaaatccttaactattactctgagggcactggtgagcaagatcctt 369  Q
       ||||||||| |||||| ||| | ||||||||| |||| ||||||| ||||    
T  14193863 ttatttttaaattcttaaccattgccctgagggcattggttagcaagaccctt 14193811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 53261554 - 53261667
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||||||||||||||||||| ||||| | ||| |||||||||| ||||||| |||| ||| ||| ||||||||||||||| |||    
T  53261554 actctttaagcatgctaaattaagtaattattctttaaaaatttaaaagttttcaatttccaatgcagtgattacacaaacttttataaaaagttactat 53261653  T
Q  119 ttaaggtccttaac 132  Q
    |||| |||||||||    
T  53261654 ttaaagtccttaac 53261667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 49951800 - 49951716
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaattttt 103  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||| ||||||||    
T  49951800 actctttaagcatgctaaattaagtaattattcttttaaaatgtcaaagttttcaattttcaatgcaccgattacacaaattttt 49951716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 38868837 - 38868936
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    |||||||||||||| ||||| || | |||||  |||||||||||||| ||||| ||||||||||||||||  |||||||||||||| |||| ||||||||    
T  38868837 ttaagaaatctaaagaggaaattttgtcttgggaatgatgcattcaacacattgaaagtttaaaaagtaactttttctacataaaacttataaattattt 38868936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Complemental strand, 36876165 - 36876072
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||| |||||||||||| |||||||||||||||| ||  |||||||||| |||| || |||| ||| ||| |||||||||||||||    
T  36876165 tctttaagcatgctaaattaagtaactattcttttaaaatgtaaatgttttcaatttccaatacattgattacacaaacttttataaaaagtta 36876072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 45743315 - 45743424
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||| ||||||||||||| ||||||||||| ||||||| ||| ||||||||||||||| || |||| ||| || |||| ||||| ||||| |||||||    
T  45743315 tttaagtatgttaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatacagtgattacacaacttttcataaagagttactatttaa 45743414  T
Q  123 ggtccttaac 132  Q
    |  |||||||    
T  45743415 gacccttaac 45743424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 52650800 - 52650696
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||| ||||||||| |||||||||||  |||||| ||| ||||||||||||||| ||||||| ||| || |||| ||||||| ||| |||    
T  52650800 actctttaaacatgctaaattaagaaattattctttacaaatgtcaaaattttcaattttcaattcactgattacacaatttttcataaaaaattactat 52650701  T
Q  119 ttaag 123  Q
    |||||    
T  52650700 ttaag 52650696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 50617492 - 50617563
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    ||||||||| |||  ||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  50617492 actctttaaacattataaattaagtaattatttttttaaaatgtcaaacttttcaatttttaatgcactgat 50617563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 217 - 364
Target Start/End: Complemental strand, 53333664 - 53333517
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | ||||||| ||||||| | ||  |||| |||||||||| | ||||||||||||||||||||  |||||||||| |||||||| ||||||||    
T  53333664 ttaagaagtgtaaaaagaaagttctattttagaaataatgcattcaagatattaaaagtttaaaaagtaactttttctacatgaaatttataaattattt 53333565  T
Q  317 ccgtttttaaatccttaactattactctgagggcactggtgagcaaga 364  Q
       ||||||||| |||||| |||   |||||| || |||| |||||||    
T  53333564 ttatttttaaattcttaaccattgtcctgaggacattggttagcaaga 53333517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 40252652 - 40252764
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| ||| ||||||||||||||| || ||| ||||||||||| ||||||||||||||| || |||| |||  || ||| ||||||| ||| |||    
T  40252652 actctttaaacatattaaattaagtaattgttatttaaaaatgttaaagttttcaattttcaatacattgattaca-caactttcataaaaatttactat 40252750  T
Q  119 ttaaggtccttaac 132  Q
    |||| |||||||||    
T  40252751 ttaaagtccttaac 40252764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 23136617 - 23136546
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    |||| ||||| || |||||||||||||||||||||||||||| | ||| |||||||||| ||||||||||||    
T  23136617 actccttaagtatattaaattaagtaattattcttttaaaatttaaaagttttcaatttccaatgcactgat 23136546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 31262912 - 31263018
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||  ||||||||||||||||| ||| ||||||| ||| ||||| ||||| |||| |||||  ||| ||| |||||||||||||| | ||    
T  31262912 actctttaagcattctaaattaagtaattatt-tttaaaaatgtcaaagttttcgattttgaatgtactgactacacaaacttttataaaaagttgtcat 31263010  T
Q  119 ttaaggtc 126  Q
    ||||||||    
T  31263011 ttaaggtc 31263018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 35153248 - 35153351
Alignment:
Q  20 ctctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattat 118  Q
    ||||||||  || ||||||||| | |||||||||| ||||||||||| ||||||||||||||||||| | ||  || ||| ||||||||||||||| |||    
T  35153248 ctctttaaatattttaaattaaatcattattctttaaaaatgttaaagttttcaattttcaatgcactttattgcacaaacttttataaaaagttactat 35153347  T
Q  119 ttaa 122  Q
    ||||    
T  35153348 ttaa 35153351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 49795141 - 49795254
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttat-aaaaagttatta 117  Q
    |||||||||||||  ||||| ||||||||||| ||||||| | | ||| ||||||||||||||||||| ||| ||| ||| |||||| ||||| ||| ||    
T  49795141 actctttaagcatactaaataaagtaattatttttttaaatt-taaaaattttcaattttcaatgcaccgattacacaaacttttataaaaaaattacta 49795239  T
Q  118 tttaaggtccttaac 132  Q
    ||||| |||||||||    
T  49795240 tttaaagtccttaac 49795254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 4391979 - 4392067
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaact-tttcaattttcaatgcactgatcacataaatttttataaaaagttattattta 121  Q
    |||||| |||||||||||||| ||||||| |||   |||||||||||||| ||||||| ||| ||||||||||||||| |||| |||||    
T  4391979 taaatttagtaattattctttaaaaatgtcaaaaaatttcaattttcaatacactgattacacaaatttttataaaaatttatcattta 4392067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 17970806 - 17970878
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaa-cttttcaattttcaatgcactgat 90  Q
    |||||||||||||| |||||||||||||||||| |||||||| | |||  |||||||||| ||||||||||||    
T  17970806 actctttaagcatgataaattaagtaattattcatttaaaatatcaaagtttttcaatttccaatgcactgat 17970878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 18939963 - 18939864
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||||||| ||||  ||||| ||||||||||| |||| | |  |  || ||| ||||||||||||||||  ||||||||||||||||    
T  18939963 taaattaagtaattattctttaaaaaaattaaaattttcaatttttaatgtatttgttgcacaaacttttataaaaagttatcttttaaggtccttaact 18939864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 25042837 - 25042749
Alignment:
Q  22 ctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||||||| |||||||||||    |||||| ||||||||||| ||||||||||  |||| |||||| ||| ||| |||||||||||||||    
T  25042837 ctttaagcatgctaaattaagta----ttctttaaaaatgttaaaattttcaatttctaatgtactgattacacaaacttttataaaaagtta 25042749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 336
Target Start/End: Original strand, 24970939 - 24971069
Alignment:
Q  206 taaggcattaattaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaattt 305  Q
    |||||||||  ||||||| | |||| ||||| || | |||||||||||||| ||| |  ||||| ||||||||||||||||  |||||| ||| ||||||    
T  24970939 taaggcatttgttaagaagtttaaagaggaaattttgtcttgaaaatgatgtattaagcacattgaaagtttaaaaagtaaccttttctgcatgaaattt 24971038  T
Q  306 atgaattatttccgtttttaaatccttaact 336  Q
     | ||||| |||  ||||| |||||||||||    
T  24971039 gtaaattacttctatttttgaatccttaact 24971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 22889271 - 22889392
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    |||||||||||||| || ||| ||||||||||| |||||||||||||||||||   | ||   || ||| ||||||  |||| |||||||||| |||||     
T  22889271 taaattaagtaattgttttttaaaaatgttaaatttttcaattttcaatgcaccagttactctaactttcataaaagtttatcatttaaggtcattaacg 22889370  T
Q  134 cgagcactagttaacatttccc 155  Q
     | || ||||||||||||||||    
T  22889371 agtgccctagttaacatttccc 22889392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 155
Target Start/End: Original strand, 22940935 - 22941056
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    |||||||||||||| || ||| ||||||||||| |||||||||||||||||||   | ||   || ||| ||||||  |||| |||||||||| |||||     
T  22940935 taaattaagtaattgttttttaaaaatgttaaatttttcaattttcaatgcaccagttactctaactttcataaaagtttatcatttaaggtcattaacg 22941034  T
Q  134 cgagcactagttaacatttccc 155  Q
     | || ||||||||||||||||    
T  22941035 agtgccctagttaacatttccc 22941056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 27963225 - 27963156
Alignment:
Q  19 actctttaagcatgttaaa-ttaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    ||||||||  ||||||||| |||| |||||||||||||||||| ||||| ||||||||||||||| ||||    
T  27963225 actctttacacatgttaaaattaaataattattcttttaaaatattaaaattttcaattttcaatacact 27963156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 19597256 - 19597156
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||  || |||| | ||||||||||| ||||||| |||   ||||||||  |||||| |||  |||||||||||||||||| ||||||||||||    
T  19597256 tttaagcattctacattaggaaattattctttaaaaatgtcaaatagttcaatttctaatgcattgaatacataaatttttataaaatgttattatttaa 19597157  T
Q  123 g 123  Q
    |    
T  19597156 g 19597156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 37461582 - 37461492
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||| |||| |||||||||||||||   ||||||||||| ||| ||||||||||| ||||||| ||| ||| ||| ||| |||||||    
T  37461582 actctttaaacatgctaaattaagtaattaaa-ttttaaaatgtcaaagttttcaatttttaatgcaccgattacacaaactttcataaaaa 37461492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 53622299 - 53622414
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttatta 117  Q
    ||||||||| ||| ||||||||||||||| || ||||||||||| ||| |||||||||| ||   ||| | || ||| ||||||| | |||||||||| |    
T  53622299 actctttaaacatcttaaattaagtaattttttttttaaaatgtcaaaattttcaatttccagctcactttattacacaaattttcagaaaaagttatca 53622398  T
Q  118 tttaaggtccttaact 133  Q
    ||||| || |||||||    
T  53622399 tttaaagttcttaact 53622414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 2818355 - 2818421
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    ||||||||||||| |||||||||| |||||||||||||||| || |||   |||||||| |||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgca 2818421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 31557462 - 31557536
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||| | |||||| || ||| ||||  ||||||||    
T  31557462 tcttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttctatatgaaacttatagattatttc 31557536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 34015996 - 34015938
Alignment:
Q  271 aaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatc 329  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||   ||||||||||    
T  34015996 aaagttaaaaaaataatattttctacataaaatttataaattatttatatttttaaatc 34015938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 337
Target Start/End: Complemental strand, 38547554 - 38547460
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||||| | ||| |||||| ||||| |||  |||||||||| | ||||  ||||||||||||| |||||||||  |||||||||| |||||||    
T  38547554 tcttgaaagttatgtattcaacacattgaaatattaaaaagtagtttttttaacataaaatttatcaattatttctttttttaaatctttaacta 38547460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 38682096 - 38681987
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattattta 121  Q
    ||||| ||| |||| ||||||||||| ||||| ||| ||||||| ||||||||||||||| ||| | || ||| ||  ||||||||||| || |||||||    
T  38682096 tttaaacattttaagttaagtaattaatctttaaaattgttaaagttttcaattttcaatacactttattacacaagcttttataaaaa-ttgttattta 38681998  T
Q  122 aggtccttaac 132  Q
    | |||||||||    
T  38681997 aagtccttaac 38681987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 50343948 - 50343882
Alignment:
Q  17 taactctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatg 83  Q
    ||||||||||||||| ||||| |||||||||||||||| |||| || |||  ||| |||||||||||    
T  50343948 taactctttaagcattttaaaataagtaattattctttaaaaaagtcaaatattttaattttcaatg 50343882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 47937859 - 47937968
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||  ||||||| ||||||||||||| |||| || ||| |||||||||||| |||| ||| |  || ||| ||| ||||||| |||| ||    
T  47937859 actctttaaacatactaaattatgtaattattctttaaaaaagtcaaagttttcaattttctatgctctgtttgcacaaactttcataaaaaattatcat 47937958  T
Q  119 ttaaggtcct 128  Q
    ||||| ||||    
T  47937959 ttaagatcct 47937968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 335
Target Start/End: Original strand, 48051730 - 48051787
Alignment:
Q  278 aaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||  ||||||||||||||||||| |||||||||  ||||| ||||||||||    
T  48051730 aaaaagtaactttttctacataaaatttatcaattatttctatttttgaatccttaac 48051787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 21241123 - 21241191
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    ||||||||| |||||||||||||| ||| ||| ||| ||||| | ||| |||||||||| |||||||||    
T  21241123 actctttaaacatgttaaattaagaaatgattttttaaaaatatcaaaattttcaatttccaatgcact 21241191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 38354592 - 38354520
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattctttt-aaaatgttaaacttttcaattttcaatgcactgat 90  Q
    ||||||||| | | |||||||||||||||||| |||| ||||||| ||||||||||||||  ||| |||||||    
T  38354592 actctttaaaccttttaaattaagtaattatttttttaaaaatgtcaaacttttcaatttctaatacactgat 38354520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 40173588 - 40173524
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatg 83  Q
    ||||||||| |||  ||||||||||||| |||| || ||||||||||| |||| |||||||||||    
T  40173588 actctttaaacattctaaattaagtaatcattcattaaaaatgttaaagtttttaattttcaatg 40173524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 41370262 - 41370166
Alignment:
Q  35 aaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    |||||||| |||||||  |  |||| ||||||  ||||||||||||||||| |||| ||| ||||||| ||||||| ||| |||| || ||||||||    
T  41370262 aaattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttactattcaaagtccttaa 41370166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 7852654 - 7852588
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||||||||||  |||||| |||||||||||||||||||  ||||   || ||||||||||||||    
T  7852654 actctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaattttcaatgca 7852588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 47995847 - 47995781
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||||||||||  |||||| |||||||| |||||||||| |||||   || ||||||||||||||    
T  47995847 actctttaagcattctaaatttagtaattactcttttaaaaagttaattattacaattttcaatgca 47995781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 49623052 - 49622998
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    ||||||||| |||||||||||||||||||  | ||||||| ||| ||||||||||    
T  49623052 tttaagcattttaaattaagtaattattccataaaaatgtcaaaattttcaattt 49622998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 46570633 - 46570576
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaatttt 78  Q
    ||||||| ||| ||||||||||| |||| ||||| ||||||||||| |||| ||||||    
T  46570633 tctttaaacattttaaattaagttattactctttaaaaatgttaaagtttttaatttt 46570576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 8e-33; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 6539796 - 6539952
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | |||||| |||||| | | ||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||| ||||||||    
T  6539796 ttaagaagtttaaaaatgaagttttgttttgaaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 6539895  T
Q  317 ccgtttttaaatccttaactattactctgagggcactggtgagcaagatccttaaaa 373  Q
    |  ||||||||| |||||| ||| | ||||||||| |||| ||||||| || |||||    
T  6539896 ctatttttaaattcttaaccattgccctgagggcattggttagcaagacccataaaa 6539952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 229 - 364
Target Start/End: Original strand, 4462568 - 4462703
Alignment:
Q  229 aaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaat 328  Q
    ||||||||||| | ||||| ||||||||||||||| | ||| |||||||||||||||| ||||||||||||||| |||| |||||||||  |||||||||    
T  4462568 aaaaggaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaagtaacattttctacataaaacttataaattatttctatttttaaat 4462667  T
Q  329 ccttaactattactctgagggcactggtgagcaaga 364  Q
     |||||| ||| | ||||||||| |||| |||||||    
T  4462668 tcttaaccattgccctgagggcattggttagcaaga 4462703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 27325917 - 27325820
Alignment:
Q  36 aattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| | |||| ||||||| |||||| |||| |||||||||||||||||    
T  27325917 aattaggtaattattctttaaaaatgtcaaacttttcaattttcaatgcactggttacattaatttttgtaaaaatttatcatttaaggtccttaact 27325820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 38595037 - 38594928
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| ||||||| | || | ||||||||| ||||||| |||| ||||||    
T  38595037 tttaagtatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcattaattatataaattttcataaaaatttatcatttaa 38594938  T
Q  123 ggtccttaac 132  Q
     |||||||||    
T  38594937 agtccttaac 38594928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 26453748 - 26453639
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    ||||||| ||| |||||||||||||| ||| ||| ||||||| ||||||||||||||||||||| ||| | ||| ||||||||||||||  |||  ||||    
T  26453748 tctttaaacattttaaattaagtaat-attttttaaaaatgtcaaacttttcaattttcaatgcgctggttacacaaatttttataaaagtttaccattt 26453650  T
Q  121 aaggtccttaa 131  Q
    |||||||||||    
T  26453649 aaggtccttaa 26453639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 21259523 - 21259415
Alignment:
Q  24 ttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaag 123  Q
    ||||| ||||||||||||  ||||||||||| || |||| ||| |||| |||||||||||||||||| ||| ||| ||  |||||||||||| |||||||    
T  21259523 ttaagaatgttaaattaaaaaattattctttaaagatgtcaaaatttttaattttcaatgcactgattacacaaacttccataaaaagttatcatttaag 21259424  T
Q  124 gtccttaac 132  Q
    ||| |||||    
T  21259423 gtctttaac 21259415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Original strand, 26432261 - 26432372
Alignment:
Q  22 ctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattta 121  Q
    |||||||||| |||||||||||||||||| |||||||||  ||||||||||||||| ||||| |||||| |||  || ||| ||||||| |||  ||||     
T  26432261 ctttaagcattttaaattaagtaattatttttttaaaataataaacttttcaatttccaatgtactgattacactaactttcataaaaatttaccatttt 26432360  T
Q  122 aggtccttaact 133  Q
    |||| |||||||    
T  26432361 aggttcttaact 26432372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 10228315 - 10228448
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||| | ||||||||||||||| ||||| | ||| |||||||||| | |||||||| | ||| ||| |||| |||||||||| |||    
T  10228315 actctttaagcatgctaa-taaagtaattattctttcaaaatttaaaagttttcaatttccgatgcactggttacacaaacttttttaaaaagttactat 10228413  T
Q  119 ttaaggtccttaactcgagcactagttaacatttc 153  Q
    |||| ||| |||| | |  ||||||||||||||||    
T  10228414 ttaatgtctttaattaggacactagttaacatttc 10228448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 22601785 - 22601885
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||||||||||||| ||| ||||| | ||| |||| ||||||||||  |||||| | | ||||||||||||||| |||| |||||||||| |||||    
T  22601785 ttaaattaagtaattattttttaaaaatatcaaaatttttaattttcaataaactgattatacaaatttttataaaaatttatcatttaaggtctttaac 22601884  T
Q  133 t 133  Q
    |    
T  22601885 t 22601885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 1863125 - 1863255
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaactattact 342  Q
    ||||| |||||||| |||||| ||||| ||||||||||||||||  || ||||||||||| || | |||||||||  | ||| |||||||||||| | |     
T  1863125 tcttggaaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatttctatatttgaatccttaactagtgcc 1863224  T
Q  343 ctgagggcactggtgagcaagatccttaaaa 373  Q
    || |||||| |||| | ||||| ||||||||    
T  1863225 ctaagggcattggtaaacaagacccttaaaa 1863255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 12221433 - 12221546
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||  ||||||||||| ||||||||| ||| ||| ||| |||| ||||||||||| |||||| |||||||||||  |||||  |  ||||    
T  12221433 actctttaaacatactaaattaagtagttattctttaaaattgtcaaagtttttaattttcaatgtactgattacataaattttcgtaaaatttatttat 12221532  T
Q  119 ttaaggtccttaac 132  Q
    |||| |||||||||    
T  12221533 ttaaagtccttaac 12221546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 14309195 - 14309106
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||||| |||||||||||| ||||||||| ||||| | ||| |||||||||| ||||||| | || ||| ||||||| |||||||    
T  14309195 tctttaagcatattaaattaagtagttattctttaaaaatatcaaagttttcaatttccaatgcattaattacacaaattttcataaaaa 14309106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 6662077 - 6662169
Alignment:
Q  243 tcttgaaaatgatgcattcaaa-acattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaa 334  Q
    |||||| ||||||||||||||| ||||| ||||||||| || |||  |||||||||| |||||||| |||||||||  ||||| |||||||||    
T  6662077 tcttgagaatgatgcattcaaacacattgaaagtttaataaataactttttctacatcaaatttataaattatttcaatttttgaatccttaa 6662169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 4695068 - 4695139
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    |||||||||||||| ||||||||  ||||||||||| ||||| ||||| |||| ||||| ||||||||||||    
T  4695068 actctttaagcatgctaaattaaaaaattattctttaaaaatattaaagtttttaatttccaatgcactgat 4695139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 26686752 - 26686661
Alignment:
Q  29 catgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||| |||||||||| ||  ||| ||| ||| ||| ||||||||||| |||||    
T  26686752 catgttaaattaagtaagtattctttaaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagttagtattt 26686661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 120
Target Start/End: Complemental strand, 26956483 - 26956392
Alignment:
Q  29 catgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    ||||||||||||||||| |||||||| ||||||| ||| |||| |||||||||| ||  ||| ||| ||| ||| ||||||||||| |||||    
T  26956483 catgttaaattaagtaagtattctttaaaaatgtaaaagtttttaattttcaatacatcgattacacaaactttcataaaaagttagtattt 26956392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 41568775 - 41568708
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactg 88  Q
    |||||||||||  |||||||||| |||||||||  ||||||| ||| |||||||||||||||||||||    
T  41568775 tctttaagcatactaaattaagttattattcttcaaaaatgtcaaagttttcaattttcaatgcactg 41568708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 16636721 - 16636659
Alignment:
Q  71 tcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||| || ||| ||| |||||||||||||||  |||||||||||||||||    
T  16636721 tcaattttcaatgcactaattacacaaacttttataaaaagttaccatttaaggtccttaact 16636659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 14688752 - 14688832
Alignment:
Q  249 aaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatc 329  Q
    ||||||| ||||||| ||||| |||||||||||| |||| |||| ||||||||| |||| ||||||||   ||||||||||    
T  14688752 aaatgattcattcaacacattgaaagtttaaaaactaattttttttacataaaacttataaattatttttatttttaaatc 14688832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 17774388 - 17774279
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattattta 121  Q
    ||||||||| |||||| ||||||||||||||| ||||| | ||| |||||||||| |||| ||| | || ||| ||| ||| |||||||||||| |||||    
T  17774388 tttaagcattttaaatcaagtaattattctttaaaaatatcaaatttttcaatttccaatacactttattacacaaa-tttcataaaaagttatcattta 17774290  T
Q  122 aggtccttaac 132  Q
    | ||| |||||    
T  17774289 aagtcattaac 17774279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 130
Target Start/End: Original strand, 28639570 - 28639660
Alignment:
Q  41 agtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattatttaaggtcctta 130  Q
    |||||||||||||| ||||||||||| ||||||  || |||||||| | || ||| ||| ||||||||||| || |||||||| |||||||    
T  28639570 agtaattattctttaaaaatgttaaagttttcagcttccaatgcactttattacacaaacttttataaaaaattgttatttaaagtcctta 28639660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 43000759 - 43000813
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||| ||||||||||||||| ||||||| ||| |||| |||||||||||||||    
T  43000759 ttaaataaagtaattattctttaaaaatgtcaaaatttttaattttcaatgcact 43000813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 844822 - 844745
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||| ||||| |||  ||||||||||| ||||||  ||||||||| || |||| ||||| ||||||||||||||||    
T  844822 attcaacacattgaaacattaaaaagtaacattttcatcataaaattcatcaattgtttccatttttaaatccttaac 844745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 258 - 307
Target Start/End: Complemental strand, 26449313 - 26449264
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttat 307  Q
    |||||||||||| ||| ||||||||| ||| |||||||||||||||||||    
T  26449313 attcaaaacattgaaactttaaaaagaaattttttctacataaaatttat 26449264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 36609226 - 36609150
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||||| |||||||||||  ||||| | ||| |||||||||||||||| ||| || ||| ||| |||||||||||    
T  36609226 taaattaaataattattcttcaaaaatatcaaagttttcaattttcaatgtactaattacacaaacttttataaaaa 36609150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 38328685 - 38328744
Alignment:
Q  276 ttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||||  ||||  |||||||||| ||||||||||||| ||||| ||||||||||    
T  38328685 ttaaaaagtaacttttttaacataaaattcatgaattatttccttttttgaatccttaac 38328744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 334
Target Start/End: Original strand, 38370547 - 38370638
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaa 334  Q
    |||||||||||||||||| ||  |||| ||  ||| ||||||||  |||||||| |||||||||| |||||||||  || |||| |||||||    
T  38370547 tcttgaaaatgatgcattgaatgcatttaagtttttaaaagtaaatttttctacgtaaaatttatcaattatttctattcttaagtccttaa 38370638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 39177678 - 39177768
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||||||| ||| ||||| |||||||||| |||| ||||| | ||| |||||||||| |||| |||||||  || || ||||||||||||    
T  39177678 actctttaag-atgctaaataaagtaattatcctttcaaaatttaaaagttttcaatttccaatacactgattgcacaactttttataaaaa 39177768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 39335666 - 39335736
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    ||||||||| ||| ||||||||| |||||||||||| |||||| |||| |||| |||||| |||| ||||||    
T  39335666 actctttaaacattttaaattaaataattattctttaaaaatg-taaagtttttaatttttaatgtactgat 39335736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 297 - 335
Target Start/End: Original strand, 18730394 - 18730432
Alignment:
Q  297 ataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  18730394 ataaaatttataaattatttccatttttaaatccttaac 18730432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 25767635 - 25767573
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaa 81  Q
    ||||||||||| | ||||||||| ||||  |||||| ||||||||||| | ||||||||||||    
T  25767635 actctttaagctttttaaattaaataatatttctttaaaaatgttaaagtgttcaattttcaa 25767573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 34032200 - 34032142
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    |||||||||||||  |||| |||||||||||||||| |||| ||||||  |||||||||    
T  34032200 actctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaattt 34032142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 9515545 - 9515617
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||| |||| ||||||||||  |||| ||| ||||||||||| | |||| |||||||||||||| ||||||||    
T  9515545 tcttggaaattatgcattcaatgcattgaaactttaaaaagtattttttt-tacataaaatttatcaattattt 9515617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 12448667 - 12448756
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||| ||||| || ||||| |||| ||||||||  | |||| ||||||  ||||||||||||||||| |||| ||| ||| |||||||||    
T  12448667 actccttaaggattttaaaataagaaattattcaataaaaaagttaaatatttcaattttcaatgcaatgattacacaaacttttataaa 12448756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 41916297 - 41916260
Alignment:
Q  93 cataaatttttataaaaagttattatttaaggtcctta 130  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  41916297 cataaatttgtataaaaacttattatttaaggtcctta 41916260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 42488619 - 42488672
Alignment:
Q  32 gttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    ||||||| |||||||||||||||| |||| | ||| ||||||||||| ||||||    
T  42488619 gttaaatcaagtaattattctttttaaatatcaaagttttcaatttttaatgca 42488672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 1e-31; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 48551036 - 48551150
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||||||| ||||||||||| ||||||| ||| ||||||||||||||||||| ||| ||| || |||||||||||||||| |||    
T  48551036 actctttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaattttcaatgcaccgattacacaattttttataaaaagttactat 48551135  T
Q  119 ttaaggtccttaact 133  Q
    || ||||||||||||    
T  48551136 ttgaggtccttaact 48551150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 45757925 - 45758037
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||| |||||||||||| ||| ||| ||| |||||||  ||||||    
T  45757925 actctttaagcatgttaaattaagcaattattctttaaaaatgtcaaagttttcaatttacaatgcactgattacacaaactttcataaaaaaatattat 45758024  T
Q  119 ttaaggtccttaa 131  Q
    |||||||||||||    
T  45758025 ttaaggtccttaa 45758037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 228 - 369
Target Start/End: Complemental strand, 36473223 - 36473082
Alignment:
Q  228 aaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaa 327  Q
    |||||||||||| | ||| | ||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||| |||||||||  ||||||||    
T  36473223 aaaaaggaagttttgtctaggaaatgatgcattcaagacattgaaagattaaaaagtaacattttctacataaaatttataaattatttctatttttaaa 36473124  T
Q  328 tccttaactattactctgagggcactggtgagcaagatcctt 369  Q
    | |||||| ||| | |||||||||  ||| ||||||| ||||    
T  36473123 ttcttaaccattgccctgagggcatcggttagcaagaccctt 36473082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 12140145 - 12140255
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaa-tttttataaaaagttattattta 121  Q
    |||||||||| |||||||| |||||||||||||||||||| ||| |||||||||| ||||| |||||| | | ||| |||||||||||||||| ||||||    
T  12140145 tttaagcatgctaaattaaataattattcttttaaaatgtcaaagttttcaatttccaatgtactgattatacaaactttttataaaaagttactattta 12140244  T
Q  122 aggtccttaac 132  Q
    ||||| |||||    
T  12140245 aggtctttaac 12140255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 25317801 - 25317914
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||| ||||||| ||||| ||||||||||||||||||||| | ||| |||||||||| |||||||  ||| ||| ||| ||||||||||| ||| |||    
T  25317801 actcttcaagcatgctaaataaagtaattattcttttaaaatttaaaagttttcaatttccaatgcatcgattacacaaacttttataaaaatttactat 25317900  T
Q  119 ttaaggtccttaac 132  Q
    ||||||||||||||    
T  25317901 ttaaggtccttaac 25317914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 37388403 - 37388511
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||  ||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||| |||| ||| ||||||||||||||| ||||| |    
T  37388403 actctttaaatatgttaaattaagtaattattctttaaaaatgtgaaatttttcagttttcaatgcattgattacacaaatttttataaaaa-ttatttt 37388501  T
Q  119 ttaaggtcct 128  Q
    ||| ||||||    
T  37388502 ttatggtcct 37388511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 37708433 - 37708522
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    ||||||||||||| ||||| |||| ||||| ||||| |||| ||||||| |||||||||||||||||||||| ||||  |||||||||||    
T  37708433 actctttaagcatattaaaataagcaattagtctttaaaaaagttaaacatttcaattttcaatgcactgattacatgtatttttataaa 37708522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 54911199 - 54911292
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||| |||  |||||||| |||||||||||||||||||||||| |||| |||||||||| || |||| ||||||| ||| |||||||||||    
T  54911199 tctttaaacattctaaattaaataattattcttttaaaatgttaaagttttaaattttcaatacattgattacataaactttcataaaaagtta 54911292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 46725653 - 46725767
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttatta 117  Q
    |||||||||||||  ||||||||||| ||||| | | ||||||||||| ||||||||||||||||||| | || ||| ||||||||| |||||||| |||    
T  46725653 actctttaagcattctaaattaagtagttattttataaaaatgttaaaattttcaattttcaatgcactttattacacaaattttta-aaaaagttgtta 46725751  T
Q  118 tttaaggtccttaact 133  Q
    ||||| ||| ||||||    
T  46725752 tttaaagtcgttaact 46725767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 28692034 - 28691976
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  28692034 actctttaaacatattaaattaagtaattattcttttaaaatgttaaagttttcaattt 28691976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 243 - 317
Target Start/End: Complemental strand, 39818928 - 39818854
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||||| ||||| |||||||| ||||||||||||| ||||||||||| ||||||||  ||||||||    
T  39818928 tcttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacattttctacatgaaatttatagattatttc 39818854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 14146111 - 14146208
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||||||||||||||| |||| |||||| ||| ||||||||||  ||||||||||| ||| ||| || |||||||| |||  |||||| ||||||||    
T  14146111 taaattaagtaattattttttttaaatgtcaaagttttcaatttctaatgcactgattacacaaacttctataaaaatttaccatttaaagtccttaa 14146208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 44720880 - 44720972
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||| |||||||||  |||||||| ||| ||||||||  ||||  ||||||||||||  |||||||||| |||||| |||||||||    
T  44720880 tcttgaaaatggtgcattcaatgcattaaaactttcaaaagtaactttttgaacataaaatttaccaattatttccatttttagatccttaac 44720972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 114
Target Start/End: Complemental strand, 45584432 - 45584343
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||||||||||||||||||||||||||||| |  || |||| ||||||||||  | |||| ||| ||| ||| |||||||||||    
T  45584432 tttaagcatgttaaattaagtaattattcttttaaaatat--aagtttttaattttcaatatattgattacacaaactttcataaaaagtta 45584343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 278 - 337
Target Start/End: Complemental strand, 29577326 - 29577267
Alignment:
Q  278 aaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||||||| ||||||||||||||||||  |||| ||||| ||||||||||||||||||    
T  29577326 aaaaagtaattttttctacataaaatttagcaattgtttccttttttaaatccttaacta 29577267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 37359467 - 37359530
Alignment:
Q  24 ttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||| |||||||||||||||||||  | ||||||||||| ||||||||||||||| ||||    
T  37359467 ttaagcattttaaattaagtaattattccataaaaatgttaaagttttcaattttcaattcact 37359530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 24313547 - 24313661
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca-ctgatcacataaatttttataaaaagttatta 117  Q
    ||||||||| |||  ||||||||  ||||||||||| ||||||| ||| ||||||||||||||||||  | |  ||| ||||||| |||||||||||| |    
T  24313547 actctttaaacattctaaattaaacaattattctttaaaaatgtcaaagttttcaattttcaatgcattttactacacaaattttcataaaaagttatca 24313646  T
Q  118 tttaaggtccttaac 132  Q
    ||||| ||| |||||    
T  24313647 tttaaagtctttaac 24313661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 25062034 - 25061989
Alignment:
Q  45 attattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    |||||||||| ||||||||||| |||||||||||||||||||||||    
T  25062034 attattctttaaaaatgttaaaattttcaattttcaatgcactgat 25061989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 34211998 - 34212070
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| | ||| ||||| ||||||||  ||||||||    
T  34211998 ttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttc 34212070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 48600631 - 48600704
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttcc 318  Q
    |||||||||| |||  ||||| ||||| ||| ||||||||||||| |||||||| |||||||||| ||||||||||    
T  48600631 tcttgaaaattatg--ttcaatacattgaaactttaaaaagtaattttttctacgtaaaatttataaattatttcc 48600704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 9342763 - 9342672
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca-ctgatcacataaatttttataaaa 109  Q
    ||||| |||||||  || ||||| ||||||||| || ||||||||||| ||||||||||||||||||  | || ||| ||||||||||||||    
T  9342763 actctataagcattctagattaaataattattcattaaaaatgttaaagttttcaattttcaatgcattttattacacaaatttttataaaa 9342672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 256 - 335
Target Start/End: Original strand, 15985277 - 15985356
Alignment:
Q  256 gcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||| ||||| |||  |||||||||||| ||||  ||||||||||||| |||||||||| ||||| |||| |||||    
T  15985277 gcattcaacacattgaaatattaaaaagtaatttttttaacataaaatttatcaattatttccttttttgaatctttaac 15985356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 33072181 - 33072087
Alignment:
Q  59 atgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaactcgagcactagttaacatttcc 154  Q
    |||| ||| |||||||||| ||||||| | || ||| ||||||||||||||| |||  |||| |||||||||||  | ||||||||||||||||||    
T  33072181 atgtcaaagttttcaatttccaatgcattaattacacaaatttttataaaaaattaccatttcaggtccttaacgag-gcactagttaacatttcc 33072087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 245 - 364
Target Start/End: Original strand, 42983896 - 42984015
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaactattactct 344  Q
    |||||||| ||||||| || ||||| ||| ||||||||||||  ||  ||||||||||||||| ||| |||||| ||||| |||| ||||| | |  |||    
T  42983896 ttgaaaataatgcatttaacacattgaaaatttaaaaagtaactttgactacataaaatttataaatcatttccatttttgaatcattaacaagtgttct 42983995  T
Q  345 gagggcactggtgagcaaga 364  Q
     |||||||| || |||||||    
T  42983996 tagggcacttgttagcaaga 42984015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 243 - 318
Target Start/End: Original strand, 45153528 - 45153603
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttcc 318  Q
    ||||||||||| |||||||||  |||| ||| |||| |||||||  |||||||| |||||||||| ||||||||||    
T  45153528 tcttgaaaatggtgcattcaatgcattgaaactttataaagtaactttttctacttaaaatttatcaattatttcc 45153603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 38101393 - 38101341
Alignment:
Q  31 tgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgc 84  Q
    ||||||||||||||||||||||||||||||  ||||  ||||||||||||||||    
T  38101393 tgttaaattaagtaattattcttttaaaat-ataaaagtttcaattttcaatgc 38101341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 43767323 - 43767380
Alignment:
Q  255 tgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaatt 312  Q
    ||||||||| |||||||||  | |||||||||| ||||||||||||||||||| ||||    
T  43767323 tgcattcaacacattaaaacatcaaaaagtaattttttctacataaaatttatcaatt 43767380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 46712009 - 46711912
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    |||| |||||||||||||||| |||| || |||| |||  |||| ||||||| |||| ||||  ||||||||||| | || ||||||| |||||||||    
T  46712009 taaaataagtaattattctttaaaaaagtcaaacattttgatttccaatgcattgattacatgcatttttataaatacttgttatttatggtccttaa 46711912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 29612016 - 29612084
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    ||||||||| |||  |||| |||||||||||||||| ||||||| | | |||||||||| |||||||||    
T  29612016 actctttaaacattctaaaataagtaattattctttaaaaatgtgacagttttcaatttccaatgcact 29612084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 40614356 - 40614308
Alignment:
Q  39 taagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||||||||||| ||||||| ||  ||||||||||||||||||||    
T  40614356 taagtaattattctttaaaaatgtcaatgttttcaattttcaatgcact 40614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 42785581 - 42785494
Alignment:
Q  247 gaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||||||| |  ||||||||||||||||| ||||| |||   |||||||| |||| |||||||| |  |||||||||||||||    
T  42785581 gaaaatgatgcatttattacattaaaagtttaaaatgtaatttttcaaacataaaacttataaattattt-ctattttaaatccttaac 42785494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 50037272 - 50037192
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttcta-cataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||| |||||||||  ||||||| |||| |||| || |||||||||||| |||||||||| ||||| |||| |||||||    
T  50037272 attcaacacattaaaacattaaaaaataattttttttaacataaaatttatcaattatttccttttttgaatctttaacta 50037192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 3027095 - 3026980
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttatta 117  Q
    |||||||||||||  |||||||||||||| || ||| ||||| | |||  ||||| ||| |||||||| | |  ||| ||| ||| ||||||||||| ||    
T  3027095 actctttaagcattctaaattaagtaatttttatttaaaaatatcaaaggtttcattttccaatgcacttcactacacaaactttcataaaaagttacta 3026996  T
Q  118 tttaaggtccttaact 133  Q
    ||||| ||||||||||    
T  3026995 tttaaagtccttaact 3026980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 31596301 - 31596360
Alignment:
Q  276 ttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||||| ||||| ||||||||||||| |||| ||||   |||||||||||||||    
T  31596301 ttaaaaagtaattttttcaacataaaatttatcaattgtttcttattttaaatccttaac 31596360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 329
Target Start/End: Complemental strand, 31752763 - 31752692
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatc 329  Q
    |||||| |||||||||  ||||||||||   ||||| ||||||||||||| |||||||||| ||||| ||||    
T  31752763 attcaacacattaaaatattaaaaagtacatttttcaacataaaatttatcaattatttccttttttgaatc 31752692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 31830264 - 31830185
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||| ||||| ||||||||||||||||  || ||||||||||| || | |||||||||  | ||| ||||||||||||    
T  31830264 attcaacacattgaaagtttaaaaagtaactttgtctacataaaacttgtaaattatttctatatttgaatccttaacta 31830185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 44344796 - 44344717
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||| | |||||||  ||||||| |||| ||||| ||||| ||||||| |||||||||| ||| | ||||||||||||    
T  44344796 attcaacatattaaaatattaaaaaataattttttcaacatataatttatcaattatttccatttgttaatccttaacta 44344717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 131
Target Start/End: Original strand, 20821314 - 20821412
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    |||| |||||||||||||||| ||||| |||||  ||| ||||| |||||||| | || ||| ||| ||| |||||||||||  |||||| ||||||||    
T  20821314 taaactaagtaattattctttaaaaatattaaaggttttaatttccaatgcactttattacacaaactttcataaaaagttaccatttaaagtccttaa 20821412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 275 - 337
Target Start/End: Original strand, 31844987 - 31845049
Alignment:
Q  275 tttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    ||||||||||||| |||  ||||| |||||| | |||||||||| ||||| ||||||||||||    
T  31844987 tttaaaaagtaatttttcatacattaaatttgtaaattatttccttttttgaatccttaacta 31845049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 337
Target Start/End: Complemental strand, 14030356 - 14030271
Alignment:
Q  252 tgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    ||||||||||||||| || ||| || ||||||||||||||| ||| ||||| |||  ||||||||   ||||  ||||||||||||    
T  14030356 tgatgcattcaaaactttgaaacttaaaaaagtaatattttttacttaaaacttaacaattatttttattttagaatccttaacta 14030271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 16678935 - 16678980
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttc 79  Q
    ||||| ||||||||||||||||||||| | ||| ||||||||||||    
T  16678935 taaataaagtaattattcttttaaaatataaaagttttcaattttc 16678980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 39400387 - 39400298
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||||||||| ||  |||| ||| |||||||||||| || | ||||||| ||| ||||||||||||| | || ||||  |||||||||||    
T  39400387 actctttaagtatactaaaataattaattattctttaaacaagttaaacattttaattttcaatgcattaattacatgtatttttataaa 39400298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 5e-31; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 12002263 - 12002376
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| ||  ||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||||| ||| ||||||||||||||||||| |||    
T  12002263 actctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaaaagttactat 12002362  T
Q  119 ttaaggtccttaac 132  Q
    ||||| ||||||||    
T  12002363 ttaagatccttaac 12002376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 14016977 - 14016863
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||| ||||||| ||||||| ||||| | ||| |||||||||| |||||||||||||||| ||| ||||||||||| ||| |||    
T  14016977 actctttaagcatgctaaataaagtaatgattctttcaaaatttaaaagttttcaatttccaatgcactgatcacacaaacttttataaaaaattactat 14016878  T
Q  119 ttaaggtccttaact 133  Q
    |||||||||||||||    
T  14016877 ttaaggtccttaact 14016863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 1876592 - 1876479
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||| ||| ||| ||||||| |||  ||    
T  1876592 actctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactgattacacaaactttcataaaaaattaccat 1876493  T
Q  119 ttaaggtccttaac 132  Q
    |||| |||||||||    
T  1876492 ttaaagtccttaac 1876479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 243 - 335
Target Start/End: Original strand, 42350407 - 42350499
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  42350407 tcttgaaaatgatgcattcaagacattgaaaatttaaaaagtaaatttttctacataaaatttataaattatttccatttttaaatccttaac 42350499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 18842365 - 18842223
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||| ||| |||| |||||| |||| | |||| ||| ||| ||||||||||  || | ||    
T  18842365 actctttaaccattttaaattaagtaattattctttaaaaatgtcaaagtttttaatttttaatgtattgattacacaaacttttataaaatattgtaat 18842266  T
Q  119 ttaaggtccttaact----cgagcactagttaacatttcccaa 157  Q
    |||||||||||||||     |||||||||||||||||||||||    
T  18842265 ttaaggtccttaacttccgagagcactagttaacatttcccaa 18842223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 40629073 - 40628964
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    ||||| ||||||||||||||||||||||| || ||||||||||| |||| ||||| |||| ||||||| ||| ||| ||||||||||  ||| |||||||    
T  40629073 tttaaacatgttaaattaagtaattattcattaaaaatgttaaagtttttaatttccaattcactgattacacaaacttttataaaagattactatttaa 40628974  T
Q  123 ggtccttaac 132  Q
    ||||||||||    
T  40628973 ggtccttaac 40628964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 44220814 - 44220752
Alignment:
Q  25 taagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  44220814 taagcatgttaaattaagtaattattcttttaaaatgtcaaagttttcaatttccaatgcact 44220752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 20522943 - 20523031
Alignment:
Q  22 ctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||||| ||| ||||||||||||||||| ||||| | ||| |||||||||||||||||||| || ||||||| ||| |||||||    
T  20522943 ctttaagcatgctaagttaagtaattattctttcaaaatttaaaagttttcaattttcaatgcactaattacataaactttcataaaaa 20523031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 11533228 - 11533342
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||| ||| |||||||||| |||||||||||   || ||| ||| ||||||| |||  ||    
T  11533228 actctttaaacatgttaaattaataaattattctttaaaaatgtcaaagttttcaatttccaatgcactgaaggcacaaactttcataaaaaattaccat 11533327  T
Q  119 ttaaggtccttaact 133  Q
    |||||| ||||||||    
T  11533328 ttaaggcccttaact 11533342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 30486609 - 30486719
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttat-aaaaagttattattta 121  Q
    |||||| ||||||||| ||||||||||||||||||||| | ||| |||| |||||  ||||||||||| ||| ||| |||||| ||||| ||| ||||||    
T  30486609 tttaagtatgttaaataaagtaattattcttttaaaatttaaaagtttttaatttataatgcactgattacacaaacttttataaaaaaattactattta 30486708  T
Q  122 aggtccttaac 132  Q
    | |||||||||    
T  30486709 aagtccttaac 30486719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 39594599 - 39594486
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| ||| ||||||||| |||||||||||  |||| | ||| ||||||||||||| | ||||||| | | ||| ||| |||||||||||| ||    
T  39594599 actctttaagaatgctaaattaagaaattattctttataaatatcaaagttttcaattttcattacactgattatacaaactttcataaaaagttatcat 39594500  T
Q  119 ttaaggtccttaac 132  Q
    ||||| ||||||||    
T  39594499 ttaagatccttaac 39594486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 2376838 - 2376726
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||||||| ||||||||| |||||||||||| ||||| | ||| ||||||||||  || | | | || | ||||| ||| ||||||||||| |||    
T  2376838 actctttaagcattttaaattaaataattattctttaaaaatatcaaagttttcaatttctaacgtattaattatataaactttcataaaaagttactat 2376739  T
Q  119 ttaaggtccttaa 131  Q
    |||||||||||||    
T  2376738 ttaaggtccttaa 2376726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 37449541 - 37449604
Alignment:
Q  24 ttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  37449541 ttaaacattttaaattaagtaattatttttttaaaatgtcaaacttttcaattttcaatacact 37449604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 14955336 - 14955218
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | |||| |||||||| | ||||| ||||||||||||||| ||||| ||||||||||||||||  ||||||  |||||| || | | ||||||    
T  14955336 ttaagaattttaaagaggaagttttatcttggaaatgatgcattcaacacattgaaagtttaaaaagtaactttttctttataaaacttctaagttattt 14955237  T
Q  317 ccgtttttaaatccttaac 335  Q
    |  ||||| ||||||||||    
T  14955236 ctatttttgaatccttaac 14955218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 44907229 - 44907325
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaac-ttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtcctt 129  Q
    ||||||||||||||||| ||| ||||||| |||| |||||||||||||||||||| || |||  || ||| ||||||| ||| |||||||| |||||    
T  44907229 taaattaagtaattattttttaaaaatgtcaaactttttcaattttcaatgcactaataacactaactttcataaaaatttactatttaagatcctt 44907325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 7627957 - 7627866
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||| |||||||||||||||||||||| ||  ||||||| ||| |||| |||||  ||| ||||||||||| ||| ||| |||||||    
T  7627957 actctttaaacatgttaaattaagtaattatttttaaaaaatgtgaaagtttttaatttctaatacactgatcacacaaactttcataaaaa 7627866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 132
Target Start/End: Original strand, 44024029 - 44024122
Alignment:
Q  41 agtaattattcttttaaaatgttaaacttttcaa-ttttcaatgcactgatcacataaatttttat-aaaaagttattatttaaggtccttaac 132  Q
    ||||||||||||||||||||   ||| ||||||| |||||||||||||||| ||| ||| || ||| ||||| ||||||||| |||||||||||    
T  44024029 agtaattattcttttaaaataaaaaagttttcaaattttcaatgcactgattacacaaacttctataaaaaaattattattttaggtccttaac 44024122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 472085 - 471997
Alignment:
Q  249 aaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||||| |||||| ||||| ||||||||||||||||  || ||||||||||| || | |||||||||  | ||||||| ||||||||    
T  472085 aaatgatgtattcaacacattgaaagtttaaaaagtaactttatctacataaaacttgtaaattatttctatatttaaattcttaacta 471997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Original strand, 36907827 - 36907907
Alignment:
Q  50 tcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtcctta 130  Q
    ||||| ||||| | ||| |||||||||| ||||||| |||| ||| ||| ||||||||||||||| ||||||| |||||||    
T  36907827 tctttcaaaatttaaaagttttcaatttccaatgcaatgattacacaaacttttataaaaagttactatttaaagtcctta 36907907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 43841043 - 43841119
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||| |||  | |||| ||| ||||||||| |||||    
T  43841043 taaattaagtaattattctttaaaaatattaaatttttcaatttttaatatattgattacacaaatttttacaaaaa 43841119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 131
Target Start/End: Complemental strand, 26014827 - 26014752
Alignment:
Q  56 aaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||||||||  ||||||| || |||||||||||| ||| |||  |||||||||||||| |||||| |||||||||    
T  26014827 aaaatgttaatattttcaagttccaatgcactgattacacaaacatttataaaaagttactatttatggtccttaa 26014752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 42631713 - 42631776
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaattta 306  Q
    ||||||||||| |||||||||  |||||||| ||||||| ||||| |||||||| |||||||||    
T  42631713 tcttgaaaatggtgcattcaatgcattaaaactttaaaaggtaattttttctacttaaaattta 42631776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 258 - 337
Target Start/End: Complemental strand, 44711539 - 44711460
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||| ||||||||||||||||||||||| || ||||||||||| || | || ||||||  | |||||||| |||||||    
T  44711539 attcaacacattaaaagtttaaaaagtaattttatctacataaaacttgtaaagtatttctatatttaaatctttaacta 44711460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 5218142 - 5218080
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||| | ||||||||||  ||||||||||| ||||||||||| |||| |||||||||||||    
T  5218142 tttaagtacgttaaattaaaaaattattctttaaaaatgttaaaatttttaattttcaatgca 5218080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 28382893 - 28382827
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    ||||||| ||| ||||||||||||| |||| ||||||||||||||| ||| ||||||| ||| ||||    
T  28382893 tctttaaacattttaaattaagtaaatatttttttaaaatgttaaaatttacaatttttaatacact 28382827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 32271170 - 32271224
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    ||||||||| |||||||||| ||||||| ||| ||||||||||| ||||||||||    
T  32271170 tttaagcattttaaattaagaaattattttttaaaaatgttaaagttttcaattt 32271224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 35501178 - 35501064
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactg-atcacataaatttttataaaaagttatta 117  Q
    ||||||||| |||  || ||| |||||||| ||||| ||||| ||||| |||| ||||| |||||||||  || ||| ||| ||||||||||| ||| ||    
T  35501178 actctttaaacattctacatttagtaattaatctttgaaaatattaaagtttttaatttccaatgcactttattacacaaacttttataaaaatttaata 35501079  T
Q  118 tttaaggtccttaac 132  Q
    ||||| |||||||||    
T  35501078 tttaaagtccttaac 35501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 44063098 - 44063188
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||| ||||||||||| | ||| ||| |||||||| ||| |||||| | ||||||||||| ||||||||   |||||||||| |||||    
T  44063098 ttgaaaacgatgcattcaagatattgaaaatttaaaaaataacattttcaatataaaatttataaattattttaatttttaaatctttaac 44063188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 9629910 - 9629838
Alignment:
Q  38 ttaagtaattattcttttaaaatgttaaactttt-caattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||||||| ||| ||||||| |||||||| |||||||||||||| |||| |||| |||||| |||||||    
T  9629910 ttaagtaattatt-tttaaaaatgtaaaactttttcaattttcaatgcattgattacattaattttcataaaaa 9629838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 30158173 - 30158108
Alignment:
Q  18 aactctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatg 83  Q
    ||||||||||||||  |||||||| |||||||||||| ||||||| ||| |||| ||||| |||||    
T  30158173 aactctttaagcattctaaattaaataattattctttgaaaatgtaaaagtttttaatttccaatg 30158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 38047720 - 38047607
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttatta 117  Q
    |||||||||||||  |||||||||||||| ||||||  |||||| |||  ||| |||||| ||||||| | || ||| ||| ||| ||| |||||||| |    
T  38047720 actctttaagcattctaaattaagtaatttttctttataaatgtcaaaaattttaatttttaatgcactttattacacaaactttcatataaagttatca 38047621  T
Q  118 tttaaggtccttaa 131  Q
    ||||| ||||||||    
T  38047620 tttaaagtccttaa 38047607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 37953336 - 37953248
Alignment:
Q  247 gaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||||||||| ||||  |||  ||||||||||||  ||| |  ||||||||||| |||||||||  ||||| ||||||||||    
T  37953336 gaaaatgatgcattcaacacatcgaaatgttaaaaagtaattatttttttataaaatttatcaattatttctatttttgaatccttaac 37953248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 38019528 - 38019472
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaat 75  Q
    |||||||||||||| ||||||||| ||||||||||| ||| | ||||| ||||||||    
T  38019528 actctttaagcatgctaaattaagaaattattctttaaaatttttaaagttttcaat 38019472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 39691224 - 39691112
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||   | |||||  ||||||||||| |||| || |||   |||||||||||||||| |||  ||| ||||||| ||||||| ||| |||    
T  39691224 actctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattactat 39691125  T
Q  119 ttaaggtccttaa 131  Q
    ||||| |||||||    
T  39691124 ttaagatccttaa 39691112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 31844313 - 31844214
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||||||||||||| || |||| || ||| |||| ||||| |||||||| | || | | ||| ||| ||||||||||| ||||||| |||||||||    
T  31844313 taaattaagtaattattccttaaaaaagtcaaagttttgaatttccaatgcacttcattatacaaactttcataaaaagttactatttaaagtccttaac 31844214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 7513405 - 7513316
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    ||||||||||||| | |||  ||| |||||||||||  |||  |||||| |||| |||||||||||| |||| ||||  |||||||||||    
T  7513405 actctttaagcatatcaaaacaagcaattattctttagaaaaattaaacatttcgattttcaatgcattgattacatgtatttttataaa 7513316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 7859195 - 7859118
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||| |||||||||  |||||||||||  ||||| ||||||||| ||| |||| ||| | |||||||||| |||||    
T  7859195 attcaacacattaaaacattaaaaagtaactttttcaacataaaatatatcaattgttttcttttttaaatctttaac 7859118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 131
Target Start/End: Complemental strand, 27506075 - 27505979
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    |||||||||  |||||| |||||||| || |||  ||||||||||||||||||| || ||| || ||||| |||||| |||  |||||||||| ||||    
T  27506075 taaattaagatattatttttttaaaa-gtgaaatatttcaattttcaatgcactaattacacaattttttgtaaaaatttacaatttaaggtcattaa 27505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 27801336 - 27801223
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaattttta-taaaaagttatta 117  Q
    ||||||||| |||  |||||| ||||||||||||||||||| || ||   || |||||||||||||| | || ||| || |||||| |||||| ||| ||    
T  27801336 actctttaatcattctaaatttagtaattattcttttaaaaagtcaactattacaattttcaatgcattcattacacaactttttattaaaaacttacta 27801237  T
Q  118 tttaaggtccttaa 131  Q
    ||||| || |||||    
T  27801236 tttaaagtgcttaa 27801223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 324
Target Start/End: Complemental strand, 34496973 - 34496892
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgttttt 324  Q
    ||||| |||| ||| ||||||  |||| ||| |||| ||||||||||||| ||| |||||||||  |||||||||| |||||    
T  34496973 tcttgtaaattatgtattcaatgcattgaaactttataaagtaatattttatacttaaaatttaccaattatttccattttt 34496892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 38869161 - 38869108
Alignment:
Q  249 aaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaa 302  Q
    |||| ||||||| ||  |||||||||||||||||||||| |||| |||||||||    
T  38869161 aaataatgcatttaattcattaaaagtttaaaaagtaattttttttacataaaa 38869108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 5e-31; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 39973888 - 39974001
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | | ||| ||| |||||||||||| ||    
T  39973888 actctttaagcatgctaaattaagtaattattcttttaaaatgttaaagttttcaattttcaatgcattgattatacaaactttcataaaaagttatcat 39973987  T
Q  119 ttaaggtccttaac 132  Q
    |||| ||| |||||    
T  39973988 ttaaagtctttaac 39974001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 48947202 - 48947314
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    |||||||||||  ||||||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||| ||| ||||||| |||||||||||  ||||    
T  48947202 tctttaagcatactaaattaagtaattattttttaaaaatgtcaaagttttcaatttccaatgcactgattacacaaattttcataaaaagttaccattt 48947301  T
Q  121 aaggtccttaact 133  Q
    || ||||||||||    
T  48947302 aaagtccttaact 48947314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 42573879 - 42573784
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | | ||| ||  |||||||||||    
T  42573879 actctttaagcatgctaaattaagtaattattcttttaaaatgttaaggttttcaattttcaatgcactgattatacaaacttcaataaaaagtta 42573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 33791849 - 33791736
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| ||| ||||||||||||||||||||||||||||| ||| |||||||||| |||| ||| ||| ||| ||| ||| ||||||||||| |||    
T  33791849 actctttaagtatgctaaattaagtaattattcttttaaaatgtcaaatttttcaatttccaatacaccgattacacaaactttcataaaaagttactat 33791750  T
Q  119 ttaaggtccttaac 132  Q
    |||| ||| |||||    
T  33791749 ttaaagtctttaac 33791736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 290602 - 290701
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||| ||| ||| ||  || |||||||||||||||| || |||||||    
T  290602 taaattaagtaattattcttttaaaatgtcaaagttttcaatttacaatgcactgattacacaaacttcaatgaaaagttattatttaacgttcttaact 290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 217 - 369
Target Start/End: Complemental strand, 42826691 - 42826537
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaatt-att 315  Q
    ||||||| ||||||| | ||||| | |||||||||| |||||||||| ||||| ||  |||||||||||| |||||||||||||||||||| |||| |||    
T  42826691 ttaagaagtctaaaaggaaagttttgtcttgaaaattatgcattcaagacattgaagatttaaaaagtaacattttctacataaaatttataaattaatt 42826592  T
Q  316 tcc-gtttttaaatccttaactattactctgagggcactggtgagcaagatcctt 369  Q
    ||| ||||| |||| |||||| ||| | | ||||||| |||| ||||||| ||||    
T  42826591 tccagttttaaaattcttaaccattgccccgagggcattggttagcaagaccctt 42826537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 35259156 - 35259023
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||| ||| ||||||||| ||||||| ||| ||||||| ||| |||||||||| |||||| ||||| ||| | |  ||| ||||||||||  ||    
T  35259156 actctttaagtatgctaaattaagaaattattttttaaaaatgtaaaagttttcaatttccaatgcgctgattacacacacatttgtaaaaagttaccat 35259057  T
Q  119 ttaaggtccttaactcgagcactagttaacatttcc 154  Q
    |||| |||||||||  ||||||||||||||||||||    
T  35259056 ttaaagtccttaac--gagcactagttaacatttcc 35259023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 40286854 - 40286968
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||| |||| |||||||||| |||||   ||| |||||||||| |||||||||||  ||| ||| ||||||||||||||| |||    
T  40286854 actctttaagcatgctaaataaagtcattattctttcaaaattaaaaagttttcaatttccaatgcactgagtacacaaacttttataaaaagttactat 40286953  T
Q  119 ttaaggtccttaact 133  Q
    |||| || |||||||    
T  40286954 ttaaagttcttaact 40286968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 29356896 - 29357012
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| ||||||||| ||||||  ||||| |||| |||||||||| | ||| |||||||||||||||| |||||||| || | |||||||||||||||    
T  29356896 ttaagaagtctaaaaagaaagttcagtcttggaaataatgcattcaagatattgaaagtttaaaaagtaacattttctaaat-atatttatgaattattt 29356994  T
Q  317 ccgtttttaaatccttaa 334  Q
     | |||||||||| ||||    
T  29356995 tcatttttaaatcattaa 29357012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 38172665 - 38172754
Alignment:
Q  43 taattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||||||| ||||||| ||| |||| |||||| ||||||||||| ||| ||| |||||||||||||||| |||||| |||||||||    
T  38172665 taattattctttaaaaatgtaaaagtttttaatttttaatgcactgattacacaaacttttataaaaagttatcatttaaagtccttaac 38172754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 48996 - 48884
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||| |||| |||| ||||||||||||||||||||  ||||||| ||| ||||||||||||||||||| ||| ||| ||| ||| ||||||| ||| |||    
T  48996 actcgttaatcatgctaaattaagtaattattcttgaaaaatgtaaaagttttcaattttcaatgcaccgattacacaaactttcataaaaatttactat 48897  T
Q  119 ttaaggtccttaa 131  Q
     |||||| |||||    
T  48896 gtaaggttcttaa 48884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 49478808 - 49478922
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaac-ttttcaattttcaatgcactgatcacataaatttttataaaaagttatta 117  Q
    |||||||||||||||| | ||||||||||||| |||| |||||| |||  |||||||||| |||||||||||| ||| ||| || ||| ||||||||  |    
T  49478808 actctttaagcatgttgagttaagtaattattttttttaaatgtcaaaagttttcaatttccaatgcactgattacacaaacttctatgaaaagttacca 49478907  T
Q  118 tttaaggtccttaac 132  Q
    |||||| ||||||||    
T  49478908 tttaagttccttaac 49478922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 217 - 326
Target Start/End: Complemental strand, 15280589 - 15280480
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | ||||||||||||| | ||||  |||||||||| |||| | ||| |||||||||||| ||| ||||| |||||||||||||| ||||||||    
T  15280589 ttaagaagtttaaaaaggaagttttatcttagaaatgatgcactcaagatattgaaagtttaaaaaataacattttttacataaaatttataaattattt 15280490  T
Q  317 ccgtttttaa 326  Q
    |  |||||||    
T  15280489 ctatttttaa 15280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 3047863 - 3047967
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| |||||||||||||| |||||| ||||||| ||| ||||| |||| ||||||| |||| | | ||| ||| ||||||| ||| |||    
T  3047863 actctttaagcatgctaaattaagtaattgttctttaaaaatgtcaaatttttcgatttccaatgcattgattaaacaaactttcataaaaaattactat 3047962  T
Q  119 ttaag 123  Q
    |||||    
T  3047963 ttaag 3047967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 40053293 - 40053401
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||  ||||||| |||||| |||||| ||||||| ||| ||||||||||||||| || | || ||| ||| ||| ||||||||||| |||||||    
T  40053293 tttaagcattctaaattaggtaattgttctttaaaaatgtcaaagttttcaattttcaatacatttattacacaaactttcataaaaagttactatttaa 40053392  T
Q  123 ggtccttaa 131  Q
    |||| ||||    
T  40053393 ggtcattaa 40053401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 33 - 133
Target Start/End: Complemental strand, 51904665 - 51904565
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||| |  |  ||| ||| ||| ||||||| ||   ||||||||||||||||    
T  51904665 ttaaattaagtaattattcttttaaaatgttaaagttttcaatttccaatgccccaactacacaaactttcataaaaaattgcaatttaaggtccttaac 51904566  T
Q  133 t 133  Q
    |    
T  51904565 t 51904565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 16113915 - 16114006
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||||||||||  || |||||||||||||| ||| ||||||| ||| |||||||||| |||||||||||| ||| ||| ||| |||||||    
T  16113915 actctttaagcatactatattaagtaattattttttcaaaatgtcaaagttttcaatttccaatgcactgattacacaaactttcataaaaa 16114006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 4040889 - 4041003
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||||||| ||||||||||||||||||   | ||| ||| ||| |||||||||||||||  ||| || ||| ||| ||| | |||||||||| ||    
T  4040889 actctttaagcattttaaattaagtaattattacataaaagtgtcaaagttttcaattttcaatatacttattacacaaactttcacaaaaagttatcat 4040988  T
Q  119 ttaaggtccttaact 133  Q
    |||| ||||||||||    
T  4040989 ttaaagtccttaact 4041003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 31042999 - 31043085
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataa 107  Q
    |||||||||||  ||||||||||||||||| ||| ||||||| ||| |||||||||||||||||| |||| ||| ||| ||| ||||    
T  31042999 tctttaagcattctaaattaagtaattattttttaaaaatgtcaaagttttcaattttcaatgcattgattacacaaactttcataa 31043085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 34861322 - 34861251
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    |||||||||||||  ||||||||||||||||| ||| ||||||| |||| ||||||||| |||| |||||||    
T  34861322 actctttaagcattctaaattaagtaattattttttaaaaatgtcaaacatttcaatttccaatacactgat 34861251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Complemental strand, 31398506 - 31398408
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||||| |||||||| ||||||||||| ||| |||| |||||  |||| ||  || ||||||||||||||||||| ||| |||||||| || |||||    
T  31398506 taaattaaataattatttttttaaaatgtgaaattttttaatttataatgtaccaattacataaatttttataaaaaattactatttaagatcgttaac 31398408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 33744245 - 33744168
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacata 96  Q
    ||||||||||||| ||||| |||||||||||| |||||||| || |||  |||| |||||||||||| |||| |||||    
T  33744245 actctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacata 33744168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 276 - 337
Target Start/End: Complemental strand, 42592739 - 42592678
Alignment:
Q  276 ttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||||||||| ||||| ||||||||||||| |||||||||  |||||||||| |||||||    
T  42592739 ttaaaaagtaattttttcaacataaaatttatcaattatttctttttttaaatctttaacta 42592678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 48811929 - 48812018
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    ||||||||||| ||||||| ||||||||||||||||||||| || |||  ||||||| | ||||||| |||| |||   |||||||||||    
T  48811929 actctttaagcctgttaaaataagtaattattcttttaaaaagtaaaatatttcaatctccaatgcattgattacacgcatttttataaa 48812018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 28765607 - 28765519
Alignment:
Q  249 aaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||||| |||||| ||||| ||||||||||||||||| | |||| | |||||||| | ||||| |||  ||||| ||||||||||||    
T  28765607 aaatgatgtattcaacacattgaaagtttaaaaagtaatttattctgcgtaaaatttgtaaattacttctattttttaatccttaacta 28765519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 31807886 - 31807822
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||||  |||| |||||||||||||||| ||||||| | | ||||||||||||||||||||    
T  31807886 tttaagcattctaaaataagtaattattctttaaaaatgtgatagttttcaattttcaatgcact 31807822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 35543509 - 35543401
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||| ||||||||||||||||| ||||||||| | ||| |||||||||| ||||  | | || ||| ||| |||| || |||||||  ||||||    
T  35543509 tttaagcatgctaaattaagtaattatttttttaaaatatcaaagttttcaatttccaatatattaattacacaaacttttgtacaaagttaccatttaa 35543410  T
Q  123 ggtccttaa 131  Q
    |||| ||||    
T  35543409 ggtctttaa 35543401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 290959 - 290852
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| |||||  |||||||||||||| ||||| | ||| |||| ||||| |||||| ||||  ||| | | |||||||||| |||| |||    
T  290959 actctttaagcatgctaaatagagtaattattctttcaaaatttaaaagtttttaatttccaatgcgctgactacacatacttttataaaaggttactat 290860  T
Q  119 ttaaggtc 126  Q
     |||||||    
T  290859 ctaaggtc 290852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 132
Target Start/End: Original strand, 24034055 - 24034166
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    |||||||||||  |||||  |||||||||||||| ||||| | ||| ||||||||||  ||||||||||| ||| ||| | ||||||||  ||| |||||    
T  24034055 tctttaagcatactaaatagagtaattattctttcaaaatttaaaagttttcaatttctaatgcactgattacacaaactcttataaaagtttactattt 24034154  T
Q  121 aaggtccttaac 132  Q
    || |||| ||||    
T  24034155 aaagtccataac 24034166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 34620700 - 34620617
Alignment:
Q  252 tgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||||| ||||| ||| || |||||||||| |||||||||||||| |||  |||||||||  ||||  ||||||||||    
T  34620700 tgatgcattcaacacattgaaacttgaaaaagtaattttttctacataaaacttaccaattatttctattttagaatccttaac 34620617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 317
Target Start/End: Original strand, 2507012 - 2507086
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    |||||| ||||||||||| || || || ||| ||||||||||||| |||| || ||||||||||| |||||||||    
T  2507012 tcttgagaatgatgcatttaatacgttgaaattttaaaaagtaattttttatatataaaatttatcaattatttc 2507086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 17630326 - 17630372
Alignment:
Q  289 ttttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||||||||||| ||||||||||  |||||||||||||||    
T  17630326 ttttctacataaaatttataaattatttcctcttttaaatccttaac 17630372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 46804934 - 46804820
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||  |||||||| |||| ||| ||| |||||| ||||||||  ||||| |||||||||||| |||| || ||| |||| |  |||  ||    
T  46804934 actctttaagcattctaaattaattaataattttttaaaaatgataaactttctaatttccaatgcactgattacattaactttcataatagtttaccat 46804835  T
Q  119 ttaaggtccttaact 133  Q
    |||||||| ||||||    
T  46804834 ttaaggtcattaact 46804820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 4521118 - 4521029
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||||||||||||  ||||  |||  |||||||||| |||| ||||||| ||||||||| ||||||| |||| ||||  |||||||||||    
T  4521118 actctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattgattacatgtatttttataaa 4521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 44442250 - 44442350
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||| || |||||||| | ||||||||||| |||| || |||  |||||||||||||| || | |  ||| | ||||||||||||||||| |||||||    
T  44442250 tttaagtattttaaattaggaaattattctttaaaaaagtcaaatatttcaattttcaatacattaaatacacatatttttataaaaagttactatttaa 44442349  T
Q  123 g 123  Q
    |    
T  44442350 g 44442350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 258 - 317
Target Start/End: Complemental strand, 27262818 - 27262759
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    |||||| |||||||||  |||||||||||| |||||||||||||| |||| |||| ||||    
T  27262818 attcaacacattaaaacattaaaaagtaattttttctacataaaagttatcaattgtttc 27262759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 290 - 364
Target Start/End: Complemental strand, 1905783 - 1905709
Alignment:
Q  290 tttctacataaaatttatgaattatttccgtttttaaatccttaactattactctgagggcactggtgagcaaga 364  Q
    ||||||||| ||||| || ||||||||||  |||| |||||||||| ||| | || ||||||||||| |||||||    
T  1905783 tttctacatgaaattcataaattatttcctcttttgaatccttaaccattgcccttagggcactggttagcaaga 1905709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 5423854 - 5423752
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    ||||||||||| ||||||||   ||||||||||| |||| ||||||   |||||||||||||||| | |  |||||| |||| ||||||| |||  ||||    
T  5423854 tctttaagcattttaaattagaaaattattctttaaaaaagttaaatagttcaattttcaatgcattaaatacataagttttcataaaaaattaccattt 5423755  T
Q  121 aag 123  Q
    |||    
T  5423754 aag 5423752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 26700245 - 26700335
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaa 109  Q
    ||||||||| |||  ||||| |||||||||||||||||||||   ||| |||| ||||| |||| |||| || ||| ||| ||||||||||    
T  26700245 actctttaaacatactaaataaagtaattattcttttaaaattaaaaagtttttaatttccaatacactcattacacaaacttttataaaa 26700335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 34833796 - 34833738
Alignment:
Q  20 ctctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaatttt 78  Q
    ||||||||  || ||||||||| |||||||||||| ||||| ||||| |||||||||||    
T  34833796 ctctttaaatattttaaattaaataattattctttaaaaatattaaagttttcaatttt 34833738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 302
Target Start/End: Original strand, 1411676 - 1411760
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaa 302  Q
    ||||||| | |||||||||| || | ||||   ||||||| |||||| ||||| ||||||||||||||||| || |||||||||||    
T  1411676 ttaagaagtttaaaaaggaaattttatcttaggaatgatgtattcaacacattgaaagtttaaaaagtaat-ttatctacataaaa 1411760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 316
Target Start/End: Original strand, 1609740 - 1609812
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    |||||||||||||||||||||   ||| |||  |||||| ||||| |||||||| |||||||||| ||||||||    
T  1609740 tcttgaaaatgatgcattcaatgtattgaaa-cttaaaatgtaattttttctacttaaaatttatcaattattt 1609812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 8791530 - 8791485
Alignment:
Q  39 taagtaattattcttttaaaatgttaaacttttcaattttcaatgc 84  Q
    |||||||||| ||||| ||||||| ||| |||||||||||||||||    
T  8791530 taagtaattagtctttaaaaatgtaaaagttttcaattttcaatgc 8791485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 36321735 - 36321646
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||||||||||||   |||  |||||||||||||||  ||| ||||||| |||| |||| ||||||| |||| ||||  |||||||||||    
T  36321735 actctttaagcataccaaaacaagtaattattctttagaaaagttaaacatttcgatttccaatgcattgattacatgtatttttataaa 36321646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 44461597 - 44461673
Alignment:
Q  45 attattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||||||||||| ||| |||| |||||| |||||| | || ||| ||||||| ||||||| ||| |||||||    
T  44461597 attattcttttaaaatgtcaaagtttttaatttttaatgca-taattacacaaattttcataaaaatttactatttaa 44461673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 2e-30; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 217 - 341
Target Start/End: Complemental strand, 31188855 - 31188731
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| | ||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||| ||||||||    
T  31188855 ttaagaagtttaaaaaggaagttttgtcttgaaaatgatgcattcaagacattgaaagtttaaaaagtaacattttctacataaaacttataaattattt 31188756  T
Q  317 ccgtttttaaatccttaactattac 341  Q
       ||||||||| |||||| |||||    
T  31188755 ttatttttaaattcttaaccattac 31188731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 217 - 367
Target Start/End: Original strand, 5000330 - 5000481
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaata-ttttctacataaaatttatgaattatt 315  Q
    ||||||| ||||||| ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||||| | |||| ||||||||| |||| |||||||    
T  5000330 ttaagaagtctaaaatggaagttttgtcttggaaatgatgcattcaagacattgaaagtttaaaaagtaacatttttttacataaaacttataaattatt 5000429  T
Q  316 tccgtttttaaatccttaactattactctgagggcactggtgagcaagatcc 367  Q
    ||  |||||||||||||||  ||| | ||||||||| |||| ||||| ||||    
T  5000430 tctatttttaaatccttaaacattgccctgagggcattggttagcaaaatcc 5000481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 8237961 - 8238060
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||||||| ||||||| ||| |||||| |||||||||||||||| ||| ||| ||| |||||||||||  |||||||||||||||||    
T  8237961 taaattaagtaattattctttaaaaatgtcaaagttttcatttttcaatgcactgattacacaaactttcataaaaagttaccatttaaggtccttaact 8238060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 3267720 - 3267607
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| ||||| ||||||||||||||||||||| | ||| ||||| |||||||||||||| || ||| ||| ||||||||||| ||  |||    
T  3267720 actctttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttccattttcaatgcactcattacacaaacttttataaaaacttgctat 3267621  T
Q  119 ttaaggtccttaac 132  Q
    || |||||||||||    
T  3267620 tttaggtccttaac 3267607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 34299849 - 34299740
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||| || |||||| ||||||||||| ||||||| ||| |||||||||| ||| |||||||| ||| ||| ||| ||||||||||| |||||||    
T  34299849 tttaagcatgctagattaagcaattattctttaaaaatgtcaaagttttcaatttacaaagcactgattacacaaactttcataaaaagttactatttaa 34299750  T
Q  123 ggtccttaac 132  Q
    ||||||||||    
T  34299749 ggtccttaac 34299740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 24 - 132
Target Start/End: Original strand, 19619993 - 19620101
Alignment:
Q  24 ttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaag 123  Q
    ||||||||| ||||||||| ||||||||||| ||||||| ||| |||||||||| |||||||||||| | | || |||| ||||||||||| ||||||||    
T  19619993 ttaagcatgctaaattaagaaattattctttaaaaatgtcaaagttttcaatttccaatgcactgattatacaacttttcataaaaagttactatttaag 19620092  T
Q  124 gtccttaac 132  Q
    | |||||||    
T  19620093 gcccttaac 19620101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 24299237 - 24299127
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||||||||||||| |||||||| || ||||||| ||| |||| ||||| |||||||||||| | | || |||| |||||||||||||||||||    
T  24299237 tttaagcatgttaaattaagaaattattccttaaaaatgtcaaattttttaatttccaatgcactgattatacaacttttcataaaaagttattatttaa 24299138  T
Q  123 ggtccttaact 133  Q
    ||  |||||||    
T  24299137 ggctcttaact 24299127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 26871771 - 26871880
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaa 122  Q
    |||||||||| ||||| ||||||||||||||||||||| | ||| |||| |||||||| |  |||||| ||| ||| ||||||||||| ||| |||||||    
T  26871771 tttaagcatgctaaataaagtaattattcttttaaaatttaaaagttttgaattttcattatactgattacacaaacttttataaaaaattactatttaa 26871870  T
Q  123 ggtccttaac 132  Q
    ||||||||||    
T  26871871 ggtccttaac 26871880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 23797722 - 23797819
Alignment:
Q  250 aatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaactattactctgag 347  Q
    ||||||| |||||| ||||||||| ||||||||||||| |||||||| |||||||||| ||||| |||  ||||| |||| ||||||||||| |||||    
T  23797722 aatgatgtattcaatacattaaaaatttaaaaagtaattttttctacctaaaatttataaattacttctatttttgaatctttaactattaccctgag 23797819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 24610946 - 24610835
Alignment:
Q  21 tctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattattt 120  Q
    ||||||| |||| ||||||||  ||||||||||||||||||||||| |||| |||||  ||| |||| || ||| ||| ||||||||||| |||| ||||    
T  24610946 tctttaaacatgctaaattaaacaattattcttttaaaatgttaaagttttgaatttctaattcactaattacacaaacttttataaaaaattatcattt 24610847  T
Q  121 aaggtccttaac 132  Q
    || |||||||||    
T  24610846 aaagtccttaac 24610835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 27088307 - 27088409
Alignment:
Q  227 taaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagt-aatattttctacataaaatttatgaattatttccgttttta 325  Q
    ||||||||||||| | ||||| |||| || ||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || ||||||  ||||||    
T  27088307 taaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaagtaaatattttctacataaaacttataaaatatttctattttta 27088406  T
Q  326 aat 328  Q
    |||    
T  27088407 aat 27088409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 328
Target Start/End: Complemental strand, 27189994 - 27189892
Alignment:
Q  227 taaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagt-aatattttctacataaaatttatgaattatttccgttttta 325  Q
    ||||||||||||| | ||||| |||| || ||||||| ||||| |||||||||||||| |||||||||||||||||| |||| || ||||||  ||||||    
T  27189994 taaaaaggaagttttgtcttggaaataatacattcaagacattgaaagtttaaaaagtaaatattttctacataaaacttataaaatatttctattttta 27189895  T
Q  326 aat 328  Q
    |||    
T  27189894 aat 27189892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 132
Target Start/End: Complemental strand, 5482511 - 5482405
Alignment:
Q  25 taagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaagg 124  Q
    |||| ||| ||||||||||||||||||||||||||||| ||| ||||| |||| ||||||| || | ||| ||| ||| |||||||||||  |||||| |    
T  5482511 taagtatgctaaattaagtaattattcttttaaaatgtcaaagttttc-atttccaatgcattggttacacaaaatttcataaaaagttacaatttaaag 5482413  T
Q  125 tccttaac 132  Q
    ||||||||    
T  5482412 tccttaac 5482405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 5907820 - 5907933
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||  ||||||||||||||||| |||| |||||| ||||||||  |||| ||||||||| || |||  |||||| ||||||  ||| |||    
T  5907820 actctttaagcattctaaattaagtaattatt-tttttaaatgtcaaacttttttatttccaatgcactaattacactaattttcataaaagtttactat 5907918  T
Q  119 ttaaggtccttaact 133  Q
    |||| ||||||||||    
T  5907919 ttaaagtccttaact 5907933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 31498739 - 31498676
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaat 82  Q
    ||||||||| |||  |||||||||||| |||| ||||||||||||||| |||||||||||||||    
T  31498739 actctttaaacattctaaattaagtaaatatttttttaaaatgttaaagttttcaattttcaat 31498676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 39316403 - 39316300
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    ||||||||||||| |||||||||||||||||||||  | ||||| ||| ||||||||||| | || |||| | ||| ||  ||| |||||||||||| ||    
T  39316403 actctttaagcatattaaattaagtaattattcttcaataatgtcaaaattttcaatttttactgtactggttacacaagctttcataaaaagttataat 39316304  T
Q  119 ttaa 122  Q
    ||||    
T  39316303 ttaa 39316300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 41150121 - 41150034
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||||||  ||||||||||||||||||||| ||| |||||||  ||||||||  |||||||||||| | | ||||||| |||||||    
T  41150121 tttaagcatcataaattaagtaattattctttaaaagtgttaaagatttcaattcacaatgcactgattatacaaattttcataaaaa 41150034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 25176398 - 25176340
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    ||||||||| ||||||||||||  |||||||||||||||||||| ||| ||||||||||    
T  25176398 actctttaaacatgttaaattagataattattcttttaaaatgtcaaatttttcaattt 25176340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 44452152 - 44452015
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttatta 117  Q
    ||||||||| |||  ||||||||||||||||| ||| ||||| | |||  ||||||||| |||||||| | || ||| ||| ||| ||||||| ||| ||    
T  44452152 actctttaaacattctaaattaagtaattattatttaaaaatatcaaaagtttcaatttccaatgcactttattacacaaactttcataaaaaattacta 44452053  T
Q  118 tttaaggtccttaactcgagcactagttaacatttccca 156  Q
    ||||| ||| |||||  || |||||||||||||||||||    
T  44452052 tttaaagtcattaacggga-cactagttaacatttccca 44452015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 258 - 335
Target Start/End: Original strand, 35116895 - 35116972
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||| ||||| ||| || |||||| ||  ||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  35116895 attcaatacattgaaacttcaaaaaggaaatttttctacataaaatttataaattatttccttttttgaatccttaac 35116972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 25037071 - 25037007
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    ||||||||| |||||||||||||||||| ||| |||| || ||| |||| |||||||||||||||    
T  25037071 tttaagcattttaaattaagtaattattatttaaaaaggtcaaaatttttaattttcaatgcact 25037007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 43492312 - 43492244
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcact 87  Q
    |||||||||||||  |||||||||||||||||||||  |||||| ||| ||| |||||| |||||||||    
T  43492312 actctttaagcattctaaattaagtaattattctttagaaatgtcaaaatttacaatttccaatgcact 43492244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 220 - 279
Target Start/End: Original strand, 36595376 - 36595435
Alignment:
Q  220 agaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaa 279  Q
    |||| |||||| ||||| || | ||||| |||||||||||||||||||||||||||||||    
T  36595376 agaagtctaaagaggaaattttgtcttggaaatgatgcattcaaaacattaaaagtttaa 36595435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 131
Target Start/End: Original strand, 38988702 - 38988816
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaat-ttttataaaaagttatt 116  Q
    |||| |||||| | |||||||||||||| ||| ||| | ||||||||| | || ||||| |||||||| | || |||||||| ||||||||||||||||     
T  38988702 actcattaagctttttaaattaagtaataattttttaataatgttaaagtgtttaatttccaatgcactttattacataaatattttataaaaagttatc 38988801  T
Q  117 atttaaggtccttaa 131  Q
    |||||| || |||||    
T  38988802 atttaaagtgcttaa 38988816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 38362255 - 38362315
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatg 83  Q
    ||||||||| ||||||||  ||||||||| || ||||| ||||| ||||||||||||||||    
T  38362255 tttaagcattttaaattagataattattcattaaaaatattaaagttttcaattttcaatg 38362315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 18926323 - 18926418
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||||||||| |||||| | | ||||||||||| |||| || |||   |||||||||||||||| |||  ||| || |||| |||||||||||    
T  18926323 actctttaagcattttaaatcatgaaattattctttaaaaaggtgaaatagttcaattttcaatgcattgaatacacaacttttcataaaaagtta 18926418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 23682561 - 23682468
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    ||||||||| |||  |||||||| |||||||| ||||||||||| ||| |||| |||||||||| || |||| | | ||| |||||||||||||||    
T  23682561 actctttaaacattctaaattaaataattatt-ttttaaaatgtcaaagtttttaattttcaat-caatgataagacaaacttttataaaaagtta 23682468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 35494748 - 35494685
Alignment:
Q  254 atgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    |||||||||||||||| ||| || |||||| ||  |||| || |||||||||||||||||||||    
T  35494748 atgcattcaaaacattgaaatttcaaaaagaaactttttttatataaaatttatgaattatttc 35494685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 35720981 - 35721036
Alignment:
Q  250 aatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaattt 305  Q
    |||||||||||||| | ||| ||||||||||||||||  || ||||||||||||||    
T  35720981 aatgatgcattcaacatattgaaagtttaaaaagtaactttatctacataaaattt 35721036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 243 - 337
Target Start/End: Original strand, 43189821 - 43189916
Alignment:
Q  243 tcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaa-tattttctacataaaatttatgaattatttccgtttttaaatccttaacta 337  Q
    |||||| ||||||| | |||| ||||| ||| |||||||||||| | |||| |||||||||||||| ||||| |||  ||||| |||| |||||||    
T  43189821 tcttgagaatgatgtagtcaatacattgaaaatttaaaaagtaacttttttttacataaaatttataaattacttctatttttgaatcgttaacta 43189916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 46716175 - 46716266
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    ||||||||| |||  |||||||| |||||||||||| ||||| | ||| |||||||| ||||||||| | || | | ||| |||||||||||    
T  46716175 actctttaaccattctaaattaaataattattctttaaaaatatcaaagttttcaatgttcaatgcattaattatacaaacttttataaaaa 46716266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 4232761 - 4232827
Alignment:
Q  250 aatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| |||||| ||||| ||||||||||||||||| || |||| |||||| || | ||||||||    
T  4232761 aatgatgtattcaacacattgaaagtttaaaaagtaattttatctatataaaacttgtaaattattt 4232827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 10453485 - 10453531
Alignment:
Q  44 aattattcttttaaaatgttaaacttttcaattttcaatgcactgat 90  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  10453485 aattattctttaaaaatattaaaattttcaattttcaatgcattgat 10453531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 108
Target Start/End: Original strand, 42911071 - 42911145
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||| |||| ||||||||||| |||| ||  ||| |||||||||||||||||| ||| ||||  |||||||||||    
T  42911071 taaaataagcaattattctttaaaaaagtcgaacatttcaattttcaatgcaccgattacatgtatttttataaa 42911145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 335
Target Start/End: Complemental strand, 28198087 - 28198010
Alignment:
Q  258 attcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||| ||||| ||| || |||||| ||  ||||||||||||| ||||| ||||||||||  |||| ||||||||||    
T  28198087 attcaagacattgaaacttcaaaaagaaactttttctacataaattttataaattatttcctcttttgaatccttaac 28198010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 41431202 - 41431161
Alignment:
Q  18 aactctttaagcatgttaaattaagtaattattcttttaaaa 59  Q
    |||||||||||||| |||||||||| ||||||| ||||||||    
T  41431202 aactctttaagcattttaaattaagaaattatttttttaaaa 41431161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 47356681 - 47356600
Alignment:
Q  254 atgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    |||||||||| ||||||||| ||  ||||||||| || || ||||||||||||  |||||||||  |||| |||||| ||||    
T  47356681 atgcattcaacacattaaaacttacaaaagtaattttctcaacataaaatttaccaattatttctattttaaaatccgtaac 47356600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 2e-30; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 10228308 - 10228463
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||| ||||||||| ||||||||    
T  10228308 ttaagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacattaaaagttt-aaaagtaattttttctacaaaaaatttataaattattt 10228406  T
Q  317 ccgtttttaaatccttaactattactctgagggcactggtgagcaagatccttaaaa 373  Q
     | ||||||||| |||||| ||| | ||||   ||||||| ||||||| || |||||    
T  10228407 tcatttttaaattcttaaccattgccctgaaaacactggttagcaagacccataaaa 10228463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 5704667 - 5704555
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttat-aaaaagttatta 117  Q
    ||||||||| |||| ||||||||||||||||| ||||||||||||  | |||||||||||||||| | |||| ||||||| ||| || ||||| ||||||    
T  5704667 actctttaaacatgctaaattaagtaattatttttttaaaatgtt--agttttcaattttcaatgtattgattacataaactttcataaaaaaattatta 5704570  T
Q  118 tttaaggtccttaac 132  Q
    ||||| ||| |||||    
T  5704569 tttaaagtctttaac 5704555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 10364754 - 10364853
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||||||| ||||| | ||| |||||||||| |||||||||||| | |  || ||| ||||||| ||| ||||||||||||||||||    
T  10364754 taaattaagtaattattctttaaaaatatcaaagttttcaatttacaatgcactgattatacgaactttcataaaaatttactatttaaggtccttaact 10364853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 227 - 369
Target Start/End: Original strand, 3686800 - 3686942
Alignment:
Q  227 taaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaa 326  Q
    |||||| |||||| | ||||| ||||||||||||||| | ||| |||||||||||| ||  |||||| |||||||| |||| |||||||||  |||||||    
T  3686800 taaaaatgaagttttgtcttggaaatgatgcattcaagatattgaaagtttaaaaaatagcattttcgacataaaacttataaattatttctatttttaa 3686899  T
Q  327 atccttaactattactctgagggcactggtgagcaagatcctt 369  Q
    || |||||| ||| | | ||||||| || | ||||||| ||||    
T  3686900 attcttaaccattgccccgagggcattgcttagcaagaccctt 3686942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 13445841 - 13445728
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||| |||||||||||| |||||||| ||||||| ||| ||||||||||  || ||||| |||||| ||| ||| ||||||| ||| | |    
T  13445841 actctttaagcatgctaaattaagtaagtattctttaaaaatgtgaaagttttcaatttcaaaagcactaatcacacaaactttcataaaaaattacttt 13445742  T
Q  119 ttaaggtccttaac 132  Q
    ||| | ||||||||    
T  13445741 ttatgatccttaac 13445728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 335
Target Start/End: Complemental strand, 8082572 - 8082455
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattattt 316  Q
    ||||||| |||||| | ||| || | ||||||||||| |||||| ||  |||| ||| ||||||||||||| |||||| |||||||||||  ||||||||    
T  8082572 ttaagaagtctaaataagaaattttgtcttgaaaatggtgcattaaatgcattgaaactttaaaaagtaattttttct-cataaaatttactaattattt 8082474  T
Q  317 ccgtttttaaatccttaac 335  Q
    |  ||||||||||||||||    
T  8082473 ctatttttaaatccttaac 8082455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 10429738 - 10429814
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaa 110  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||||| |||| |||| ||||||| ||| |||||||    
T  10429738 ttaaatcaagtaattatt-ttttaaaatgtttaacttttcaattttcagtgcaatgattacataaactttcataaaaa 10429814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3753205 - 3753142
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaat 82  Q
    |||||||||||||| ||||| ||||||||||||||| ||||| | ||| |||||||||||||||    
T  3753205 actctttaagcatgataaataaagtaattattctttcaaaatttaaaagttttcaattttcaat 3753142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 3769428 - 3769326
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgc-actgatcacataaatttttataaaaagttatta 117  Q
    |||||||||||||| ||| | ||||||||||||||| ||||| | ||| ||||||||||||||| | | |||| ||| ||| |||||||||| |||| ||    
T  3769428 actctttaagcatgataattaaagtaattattctttcaaaatttaaaagttttcaattttcaattcaaatgattacacaaacttttataaaatgttacta 3769329  T
Q  118 ttt 120  Q
    |||    
T  3769328 ttt 3769326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 38 - 131
Target Start/End: Complemental strand, 30910521 - 30910428
Alignment:
Q  38 ttaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||| |||||||| || |||| ||||||  ||| |||||| ||  || | || ||||||||||||||||||| ||||||||||||||||||||    
T  30910521 ttaagaaattattcattcaaaaagttaaatattttaatttttaacacattaattacataaatttttataaaaacttattatttaaggtccttaa 30910428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 32547693 - 32547765
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| | ||| ||||| ||||||||  ||||||||    
T  32547693 ttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttc 32547765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 29716871 - 29716761
Alignment:
Q  23 tttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcac-tgatcacataaatttttataaaaagttattattta 121  Q
    |||||||||  |||||| || ||||||| ||||||||||| ||| |||||||||| |||||||| | || ||| ||| ||| |||||| ||||  |||||    
T  29716871 tttaagcattctaaattcagcaattatttttttaaaatgtcaaagttttcaatttccaatgcactttattacacaaactttcataaaaggttaccattta 29716772  T
Q  122 aggtccttaac 132  Q
    | |||||||||    
T  29716771 aagtccttaac 29716761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 34552610 - 34552549
Alignment:
Q  22 ctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatg 83  Q
    |||||||||| ||| ||| |||||||||||||| ||||| ||||| |||| |||||||||||    
T  34552610 ctttaagcattttacatttagtaattattctttaaaaatattaaagtttttaattttcaatg 34552549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 34552265 - 34552221
Alignment:
Q  41 agtaattattcttttaaaatgttaaacttttcaattttcaatgca 85  Q
    |||||||||||||| ||||| ||||| ||||||||||||||||||    
T  34552265 agtaattattctttaaaaatattaaagttttcaattttcaatgca 34552221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 6586527 - 6586414
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattat 118  Q
    |||||||||||||  ||||||| | ||||| ||||| |||| || | |   |||||||| | ||||| |||  ||||||||||| ||||||||||| |||    
T  6586527 actctttaagcatactaaattaggaaattaatctttgaaaaagtcagatagttcaatttccgatgcattgaaaacataaattttcataaaaagttactat 6586428  T
Q  119 ttaaggtccttaac 132  Q
    |||||  |||||||    
T  6586427 ttaagacccttaac 6586414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 12226765 - 12226696
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaa-cttttcaattttcaatgcact 87  Q
    |||||||||  || ||||| |||  |||||||||||||||||||||||  ||||||||||||||| ||||    
T  12226765 actctttaataattttaaaataaaaaattattcttttaaaatgttaaatattttcaattttcaatacact 12226696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 21130706 - 21130807
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaac-ttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaa 131  Q
    ||||||| ||| |||||| ||||||||||| |||| |||| |||||||||| |||| ||  ||  || ||| ||||||  ||| ||||||||||||||||    
T  21130706 ttaaatttagttattatttttttaaaatgtcaaacttttttaattttcaatacactaattgcaccaactttcataaaagtttactatttaaggtccttaa 21130805  T
Q  132 ct 133  Q
    ||    
T  21130806 ct 21130807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 30509312 - 30509401
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaa 108  Q
    |||||||||||||   ||| |||| ||||||||||| ||||  | |||| |||| |||||||||||| |||| ||||  |||||||||||    
T  30509312 actctttaagcataccaaaataagcaattattctttaaaaaaatcaaacatttcgattttcaatgcattgattacatgtatttttataaa 30509401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 31597600 - 31597543
Alignment:
Q  255 tgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaatt 312  Q
    ||||||||| |||||||||  |||||||||||  |||||||||||||| |||| ||||    
T  31597600 tgcattcaacacattaaaacattaaaaagtaactttttctacataaaagttataaatt 31597543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 26697 - 26792
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagtta 114  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||| ||| |||  ||||||||||    
T  26697 actctttaagcatgctaaattaagtaattattattttaaaatgtcaaagttttcaattttcaatgcactgattacacaaactttcgtaaaaagtta 26792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0495 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 217 - 373
Target Start/End: Original strand, 5027 - 5182
Alignment:
Q  217 ttaagaaatctaaaaaggaagttctctcttgaaaatgatgcattcaaaaca-ttaaaagtttaaaaagtaatattttctacataaaatttatgaattatt 315  Q
    ||||||||| ||||||||||||| | ||||| ||||||||||||||| ||| |||||||||| ||||||||| ||||||||| ||||||||| |||||||    
T  5027 ttaagaaatttaaaaaggaagttttttcttggaaatgatgcattcaagacatttaaaagttt-aaaagtaattttttctaca-aaaatttataaattatt 5124  T
Q  316 tccgtttttaaatccttaactattactctgagggcactggtgagcaagatccttaaaa 373  Q
    | | ||||||||| |||||| ||| | ||||   ||||||| ||||||| || |||||    
T  5125 ttcatttttaaattcttaaccattgccctgaaaacactggttagcaagacccataaaa 5182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 53; Significance: 7e-21; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 35273 - 35372
Alignment:
Q  33 ttaaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaac 132  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||| ||| ||||||| ||| ||| ||| |||||||||    
T  35273 ttaaatcaagtaattatt-ttttaaaatgttaaacttttcaattttcagtgcaatgattacataaactttcataaaaatttactatctaatgtccttaac 35371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 19578 - 19677
Alignment:
Q  34 taaattaagtaattattcttttaaaatgttaaacttttcaattttcaatgcactgatcacataaatttttataaaaagttattatttaaggtccttaact 133  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| |||  |  ||| ||| ||||||| |||||||||||| |||||||||| ||||||    
T  19578 taaattaagtaattattctttaaaaatgttaaagttttcaatttttaatatatcgattacacaaattttcataaaaagttatcatttaaggtctttaact 19677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Original strand, 3979 - 4051
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| | ||| ||||| ||||||||  ||||||||    
T  3979 ttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttc 4051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 245 - 317
Target Start/End: Complemental strand, 3350 - 3278
Alignment:
Q  245 ttgaaaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaatttatgaattatttc 317  Q
    ||||||||||||| ||||| |||||||| ||||||||||||| | ||| ||||| ||||||||  ||||||||    
T  3350 ttgaaaatgatgctttcaacacattaaacgtttaaaaagtaacaatttttacatgaaatttatagattatttc 3278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5758 - 5816
Alignment:
Q  19 actctttaagcatgttaaattaagtaattattcttttaaaatgttaaacttttcaattt 77  Q
    |||||||||| || ||||||||||||||| |||||| ||||||| ||| ||||||||||    
T  5758 actctttaagaattttaaattaagtaatttttctttaaaaatgtcaaagttttcaattt 5816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 48470 - 48415
Alignment:
Q  249 aaatgatgcattcaaaacattaaaagtttaaaaagtaatattttctacataaaattt 305  Q
    ||||||||||||||| | |||||||||||||||||| || |||| ||||||||||||    
T  48470 aaatgatgcattcaatatattaaaagtttaaaaagttat-ttttttacataaaattt 48415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0392 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 273 - 335
Target Start/End: Complemental strand, 13749 - 13687
Alignment:
Q  273 agtttaaaaagtaatattttctacataaaatttatgaattatttccgtttttaaatccttaac 335  Q
    ||||||||||||||| |||| |||||||||||| | ||| |||||| ||||| |||| |||||    
T  13749 agtttaaaaagtaattttttttacataaaatttgtaaatcatttccattttttaatctttaac 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 287 - 356
Target Start/End: Original strand, 34399 - 34468
Alignment:
Q  287 tattttctacataaaatttatgaattatttccgtttttaaatccttaactattactctgagggcactggt 356  Q
    |||||||||| ||||||| || ||||||||||  ||||||||||||||| | | |||| | |||||||||    
T  34399 tattttctacctaaaattcataaattatttcctcttttaaatccttaaccactgctcttaaggcactggt 34468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University