View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939-Insertion-3 (Length: 920)
Name: NF4939-Insertion-3
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939-Insertion-3 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0251 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 8 - 920
Target Start/End: Original strand, 47812922 - 47813814
Alignment:
| Q |
8 |
gttaaggtgtggtaagagttgtagacttcgttggataaactacttgagaccagatatcaaacgaggtaaatttagcaaagaagaagaagattcaatccta |
107 |
Q |
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| T |
47812922 |
gttaaggtgtggtaagagttgtagacttcgttggataaactacttgagaccagatatcaaacgaggtaaatttagcaaagaagaagaagattcaatccta |
47813021 |
T |
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| Q |
108 |
aagctacatgaagttcttggtaataagtgagtatatgttatagactctattatcttttccaattcggtacttgtcttttgtatgtatttttagcattaag |
207 |
Q |
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| T |
47813022 |
aagctacatgaagttcttggtaataagtgagtagatgttatagactctattatcttttccaattccgtacttgtcttttgtatgtatttttagcattaac |
47813121 |
T |
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| Q |
208 |
ggcgggtttgacaaaattattgtagcacttgttgaaatttcaaagtgattcttttttaaaatcacaccagcacaccgtgatt------aattatgcaaaa |
301 |
Q |
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| T |
47813122 |
ggcaggtttgacaaaattattgtagcacttgtttgaatttcaaagtgattcttttttaaaatcacactagcacaccgtgattgtgattaattatgcaaaa |
47813221 |
T |
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| Q |
302 |
ttgactgttttggcttctaaatggtattttataccgaagaatttagtgattattgtattgagcctattaactagttatagagatatataagttctacatc |
401 |
Q |
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| T |
47813222 |
ttgactgttttggcttctaaatggtattttataccgaagaatttag----------------------aactagttatagagatatataagttctacatc |
47813299 |
T |
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| Q |
402 |
nnnnnnnggactaaatatcatatatctatctacatgtagcataccataaaatgtgattgatcaatttagtcctctaattgatacaagatgaaaattaatt |
501 |
Q |
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| T |
47813300 |
tttttttggactaaatatcatatatc----tacatgtagcataccataaaatgtgattgatcaatttagtcctctaattgatacaagatgaaaattaatt |
47813395 |
T |
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| Q |
502 |
tattagcgatcctttatgctcagatggtctgcaattgcagcaagattaccaggacgaacagataatgaagtgaagaacttttggcatacacatttgaaga |
601 |
Q |
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| T |
47813396 |
tattagcgatcctttatgctcagatggtctgcaattgcagcaagattaccaggacgaacagataatgaagtgaagaacttttggcatacacatttgaaga |
47813495 |
T |
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| Q |
602 |
aaaaggtgcaaaaaagtgaagtgtacaatgtcaatacctcttattcatatactttggatgaggcacaagcaagtgatggttatagtagtgtcggtgaaaa |
701 |
Q |
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| T |
47813496 |
aaaaggtgcaaaaaagtgaagtgtacaatgtcaatacctcttattcatatactttggatgaggcacaagcaagtgatggttatagtagtgtcggtgaaaa |
47813595 |
T |
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| Q |
702 |
aagagttatttccaattatggtttagtctcaagcaaggatccaaacactgtagggtcaggattttacaatgcaacctcttgtgatactttaggagaaaat |
801 |
Q |
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| T |
47813596 |
aagagttatttccaattatggtttagtctcaagcaaggatccaaacactgtagggtcaggattttacaatgcaacctcttgtgatactttaggagaaaat |
47813695 |
T |
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| Q |
802 |
atggaccatcatggttcaagtcagattagtgaagaaatggaattttggtacgatgtattcattaaatcaggtcaaccatcatgaggaagtggaaatttag |
901 |
Q |
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| T |
47813696 |
atggaccatcatggttcaagtcagattagtgaagaaattgaattttggtacgatgtattcattaaatcaggtcaaccatcatgaggaagtggaaatttag |
47813795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 37881918 - 37881862
Alignment:
| Q |
11 |
aaggtgtggtaagagttgtagacttcgttggataaactacttgagaccagatatcaa |
67 |
Q |
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| T |
37881918 |
aaggtgtggtaagagttgtcgtcttcgatggacaaactatttgagacctgatatcaa |
37881862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 547 - 585
Target Start/End: Complemental strand, 42788805 - 42788767
Alignment:
| Q |
547 |
ttaccaggacgaacagataatgaagtgaagaacttttgg |
585 |
Q |
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| T |
42788805 |
ttaccaggaagaacagataatgaggtgaagaacttttgg |
42788767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 590
Target Start/End: Original strand, 10014 - 10057
Alignment:
| Q |
547 |
ttaccaggacgaacagataatgaagtgaagaacttttggcatac |
590 |
Q |
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| T |
10014 |
ttacctggaagaacagataatgaagtgaagaactattggcatac |
10057 |
T |
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