View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939-Insertion-6 (Length: 664)
Name: NF4939-Insertion-6
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939-Insertion-6 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 12121935 - 12122346
Alignment:
| Q |
8 |
gtggctagtagaatcttaaaaaattatgattcttcgatagatattttgtaaatccagcttctccatccttaatttgttgtgttaacaatttccactgtac |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
12121935 |
gtggctagtagaatcttaaaaaattatgattcttcgatagatattttgtaaatccggcttctccatccttaatttgttgtgttaacaatttccaccacac |
12122034 |
T |
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| Q |
108 |
ccttatgttttgcatttccccaaagttgttcaagtacacgaatgtcttcatgaaccatcgggttaaagtttgtgaagatcacttgaaatctaaatagagt |
207 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12122035 |
ccttatgttttgcatttccacaaagttgttcaagtacacgaatgtcttcatgaaccatcgggttaaagtttgtgaagatcacttgaaatctaaatagagt |
12122134 |
T |
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| Q |
208 |
ggcccttctagaaatatatttttcctcatgtgacttagggttaacaaaatcttgattttctgcatcatggaaatctttttcttgatcatatctaccagtt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
12122135 |
ggcccttctagaaatatatttttcctcatgtgacttagggttaacaaaatcttgattttctacatcatggaaatctacttcttgatcatatttaccagtt |
12122234 |
T |
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| Q |
308 |
tcttggcttgataacacaaccaaagagttttgttcatatgttatacatgttctaccaacctgacctgaaggggtttgatagatttgaacaatgt-cccat |
406 |
Q |
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| T |
12122235 |
tcttggcttgataacacaaccaaagagttatgttcatatgttatacatgttctaccaacctgagttgaaggggtttgataaatttgaacaatgtccccat |
12122334 |
T |
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| Q |
407 |
caaggacctaca |
418 |
Q |
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|||||||||||| |
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| T |
12122335 |
caaggacctaca |
12122346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 13658615 - 13658563
Alignment:
| Q |
607 |
ggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatt |
659 |
Q |
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| T |
13658615 |
ggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatatt |
13658563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 607 - 664
Target Start/End: Original strand, 33582519 - 33582576
Alignment:
| Q |
607 |
ggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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| T |
33582519 |
ggatcttctcaagggcaggcaggtgccatggcatcccctaaacttactatatttatag |
33582576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 607 - 664
Target Start/End: Complemental strand, 32983781 - 32983724
Alignment:
| Q |
607 |
ggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||| |
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| T |
32983781 |
ggatcttctcaagggcaggaaggtgtcatggcaacccctgaacttactatatttatag |
32983724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 607 - 659
Target Start/End: Complemental strand, 148376 - 148324
Alignment:
| Q |
607 |
ggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatt |
659 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
148376 |
ggatcttctcaagggcaggcaggtgccatggcatcccctgaacttactatatt |
148324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 608 - 664
Target Start/End: Original strand, 36560510 - 36560566
Alignment:
| Q |
608 |
gatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
36560510 |
gatcttctcaagggcagacaggtgtcatggcatcccctgaatttactatattgatag |
36560566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 607 - 658
Target Start/End: Original strand, 9991669 - 9991720
Alignment:
| Q |
607 |
ggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatat |
658 |
Q |
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|||||||||| |||||| ||| ||| |||||||||||||||| ||||||||| |
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| T |
9991669 |
ggatcttctctagggcaggcaagtgccatggcatcccctgaatttactatat |
9991720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 36433115 - 36433059
Alignment:
| Q |
608 |
gatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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|||||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||| |
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| T |
36433115 |
gatcttctcaagggcaggcaggtgccatggcatcacctgaatttactatatttatag |
36433059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 658
Target Start/End: Original strand, 38639899 - 38639958
Alignment:
| Q |
598 |
tcaggggcgggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatat |
658 |
Q |
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| T |
38639899 |
tcaggggcgg-atctcttcaggggcaggcaggtgccatggcatcccctgaagttactatat |
38639958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 608 - 664
Target Start/End: Complemental strand, 28756177 - 28756121
Alignment:
| Q |
608 |
gatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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|||||||| ||||||| ||||||| ||||||||||| |||| ||||||||||||||| |
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| T |
28756177 |
gatcttctaaagggcaggcaggtgccatggcatcccttgaatttactatatttatag |
28756121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 594 - 664
Target Start/End: Original strand, 21519275 - 21519344
Alignment:
| Q |
594 |
ataatcaggggcgggatcttctcaagggcaagcaggtgtcatggcatcccctgaacttactatatttatag |
664 |
Q |
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|||| ||||||||| |||||||||||| || ||||| |||||||||||||| || ||||||||| ||||| |
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| T |
21519275 |
ataagcaggggcgg-atcttctcaaggacaggcaggggtcatggcatcccccaaatttactatatgtatag |
21519344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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