View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939-Insertion-7 (Length: 569)
Name: NF4939-Insertion-7
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 203
Target Start/End: Complemental strand, 10309443 - 10309253
Alignment:
| Q |
9 |
gaacgatgaatgaagtttgtataagaatgctatggtattcaatgtgagtaggaatttaacgtggtgaaaagtctgaatcccgagttcaagaatgctactg |
108 |
Q |
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| T |
10309443 |
gaacgataaatgaagttcatatgagaatgctatgattttcaatata--taggaatttgatgtggtgaaaagtgtgaatcccgcgttccataaagctactg |
10309346 |
T |
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| Q |
109 |
aaaggatcaatgtttataagcaccacaggcagacaattcaggtaactccattggcaatgcttctgcattaatgcatatacgacttagaaaatgtc |
203 |
Q |
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| T |
10309345 |
aaagaatcaatatttataagcaccacagacagacaattcaggtaacttcatcagttatggttttgcattaat--atatacgacataaaaaatgtc |
10309253 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 34145806 - 34145770
Alignment:
| Q |
366 |
agcttgagtattctatagtgtcacctaaatagcttgg |
402 |
Q |
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| T |
34145806 |
agcttgagtattctatagtgtcacctaaatagcttgg |
34145770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 171
Target Start/End: Complemental strand, 38432366 - 38432282
Alignment:
| Q |
90 |
gagttcaagaatgctactga---aaggatcaatgtttataagcaccacaggcagacaattcaggtaactccattggcaatgcttc |
171 |
Q |
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| T |
38432366 |
gagtccaagaatgctactgttgtaaggatcaatgtttacaagcatcacagacagaccattcaggtaagttcattgccaatacttc |
38432282 |
T |
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