View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939-Insertion-9 (Length: 465)
Name: NF4939-Insertion-9
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 193 - 440
Target Start/End: Original strand, 13627421 - 13627694
Alignment:
| Q |
193 |
aatagtacttcaaatctatcacatttaatatatagaataattcatgcaaacctaatgtatttagaaaccataattaagcataaaggttacttaaccaaaa |
292 |
Q |
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| T |
13627421 |
aatagtacttcaaatctatcacatttaatatataaaataattcatgcaaatataatgtatttatataccatacttaagcataaagattacttgaccaaaa |
13627520 |
T |
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| Q |
293 |
catcttcatgagcatccaaacattgtctcacaataaa---------------aaagtttaacaactgttt--------tataattgaaagaaaaaactaa |
369 |
Q |
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| T |
13627521 |
catcttcatgagcatccaaacattgtctcacaataaaaaaacatccaaccataaagttgaacaactgtttaacaactcaataattgaaagaaaaaactaa |
13627620 |
T |
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| Q |
370 |
aatgatgtaaatga---atcacatcatatcccttttaacaacatacactttattaccaccaccatgcttcatac |
440 |
Q |
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| T |
13627621 |
aatgatgcaaatgaattatcacaccatatccattttaacaacaaacacttttttaccaccaccatgcttcatac |
13627694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 13637316 - 13637439
Alignment:
| Q |
8 |
gaaattcatattgattgagtgacaaaaaataaattacaaatttttacaccaacattcaaaatcatattgtaatttggaaaaaggaaagcaaagtttcttc |
107 |
Q |
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| T |
13637316 |
gaaattcatattgattgagtgacaaaaaataaattacaaatttttacaccaacattcaaattcatattgtaatttggaaaaaggaaagcaaagtttcttc |
13637415 |
T |
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| Q |
108 |
ttgagagagtttattttgatccaa |
131 |
Q |
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| T |
13637416 |
ttgagagagtttattttgatccaa |
13637439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 14737115 - 14737156
Alignment:
| Q |
52 |
tacaccaacattcaaaatcatattgtaatttggaaaaaggaa |
93 |
Q |
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| T |
14737115 |
tacaccaacattcaacttcatattgtattttggaaaaaggaa |
14737156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 14743682 - 14743723
Alignment:
| Q |
52 |
tacaccaacattcaaaatcatattgtaatttggaaaaaggaa |
93 |
Q |
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| T |
14743682 |
tacaccaacattcaacttcatattgtattttggaaaaaggaa |
14743723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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