View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939_low_10 (Length: 237)
Name: NF4939_low_10
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 42591909 - 42591691
Alignment:
| Q |
1 |
ttaaattactcatacctcgtggcatcagagcacaagagaactacatgtttacttggagctttgaagactctaaagaatacaggagtgaactctgccaaat |
100 |
Q |
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| T |
42591909 |
ttaaattactcatacctcgtggcatcagagcacaagagaactacatgtttacttggagctttgaagactctaaagaatacaggagtgaactctgccaaat |
42591810 |
T |
|
| Q |
101 |
tttctgaagccaaagtcaaaagaccaaaaggtccaacaccaccttgaacttttgaacctttttgggaacaaaggtcttgtgcatttacccaacttggatc |
200 |
Q |
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| T |
42591809 |
tttctgaagccaaagtcaaaagaccaaaaggtccaacaccaccttgaacttttgaacctttttgggaacaaaggtcttgtgcatttacccaacttggatc |
42591710 |
T |
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| Q |
201 |
ataagcctctgccttatcc |
219 |
Q |
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||||||||||||||||||| |
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| T |
42591709 |
ataagcctctgccttatcc |
42591691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 25951262 - 25951404
Alignment:
| Q |
22 |
gcatcagagcacaagagaactacatgtttacttggagctttgaagactctaaagaatacaggagtgaactctgccaaattttctgaagccaaagtcaaaa |
121 |
Q |
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| T |
25951262 |
gcatcagagcacatgagaatcacgtgtttatttgaagctttgaaaattctaaagaacacaggagtatactcttcaagttttttggaagccaatgtcagaa |
25951361 |
T |
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| Q |
122 |
gaccaaaaggtccaacaccaccttgaacttttgaacctttttg |
164 |
Q |
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| T |
25951362 |
gtccaaatggtccaatcccaccttgaacctttgaacccttttg |
25951404 |
T |
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