View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4939_low_11 (Length: 234)
Name: NF4939_low_11
Description: NF4939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4939_low_11 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40526517 - 40526290
Alignment:
| Q |
1 |
aactcattttaatcaatttgtggcattaannnnnnncttcatcaaaccaacaatttatttcaatcaattaaatctttttaccaaactatagttttctaca |
100 |
Q |
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| T |
40526517 |
aactcatcttaatcaatttgtggcattaatttttttcttcatcaaaccaacaatttatttcaatcaattaaatctttttaccaaactatagttttctaca |
40526418 |
T |
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| Q |
101 |
acaaaaattatttatttaaaagtaaccaatatacacacnnnnnnnnnnatcaaatcaaaaaccacccatctttaaattttcatcgcatcagaaggtaact |
200 |
Q |
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| T |
40526417 |
acaaaaattatttatttaaaagtaaccaatatacacacatttttt----tc--atcaaaaaccacccttctttaaattttcatcgcatcagaaggtaact |
40526324 |
T |
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| Q |
201 |
aagcgaaggtttttgtgtgctaatgtttttattt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40526323 |
aagcgaaggtttttgtgtgctaatgtttttattt |
40526290 |
T |
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